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4TMX

Translation initiation factor eIF5B (517-858) mutant D533N from C. thermophilum, bound to GTP and sodium

Functional Information from GO Data
ChainGOidnamespacecontents
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
Functional Information from PDB Data
site_idAC1
Number of Residues29
Detailsbinding site for residue GTP A 901
ChainResidue
AVAL532
AILE556
ATHR557
AGLY597
AASN648
ALYS649
AASP651
AARG652
ASER716
AALA717
AHIS718
AASN533
ANA902
AMG903
AHOH1085
AHOH1086
AHOH1089
AHOH1110
AHOH1200
AHOH1272
AHOH1307
AHOH1395
ATHR534
AGLY535
ALYS536
ATHR537
ALYS538
AGLN549
AGLY555

site_idAC2
Number of Residues4
Detailsbinding site for residue NA A 902
ChainResidue
AASN533
AGLY555
AILE556
AGTP901

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 903
ChainResidue
ATHR537
ATHR557
AGTP901
AHOH1085
AHOH1086

site_idAC4
Number of Residues8
Detailsbinding site for residue EDO A 904
ChainResidue
AVAL576
AVAL577
ALYS579
AASN662
AGLY663
AGLU666
AHOH1094
AHOH1365

site_idAC5
Number of Residues3
Detailsbinding site for residue EDO A 905
ChainResidue
ALYS673
AGLN676
AARG680

site_idAC6
Number of Residues3
Detailsbinding site for residue EDO A 906
ChainResidue
AGLU678
AASN681
AHOH1063

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 907
ChainResidue
ACYS734
AGLN735
AMET738
ASER740
AMET743
AHOH1265

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 908
ChainResidue
AHIS598
AGLU599
AHOH1090
AHOH1204
BLYS579
BASP580
BGLY581

site_idAC9
Number of Residues2
Detailsbinding site for residue EDO A 909
ChainResidue
AGLN572
ALYS573

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO A 910
ChainResidue
AHOH1001
BLEU521
BLYS586
BHOH1012
BHOH1038

site_idAD2
Number of Residues28
Detailsbinding site for residue GTP B 901
ChainResidue
BHOH1380
BVAL532
BASN533
BTHR534
BGLY535
BLYS536
BTHR537
BLYS538
BGLN549
BGLY555
BILE556
BTHR557
BGLY597
BASN648
BLYS649
BASP651
BARG652
BSER716
BALA717
BHIS718
BNA902
BMG903
BHOH1088
BHOH1089
BHOH1091
BHOH1179
BHOH1199
BHOH1279

site_idAD3
Number of Residues5
Detailsbinding site for residue NA B 902
ChainResidue
BASN533
BGLY555
BILE556
BGTP901
BHOH1089

site_idAD4
Number of Residues5
Detailsbinding site for residue MG B 903
ChainResidue
BTHR537
BTHR557
BGTP901
BHOH1088
BHOH1089

site_idAD5
Number of Residues10
Detailsbinding site for residue EDO B 904
ChainResidue
BVAL532
BASN533
BTHR534
BASP620
BHIS623
BGLU626
BLYS649
BHOH1162
BHOH1247
BHOH1388

site_idAD6
Number of Residues5
Detailsbinding site for residue EDO B 905
ChainResidue
BPRO642
BPHE643
BARG708
BVAL710
BARG737

site_idAD7
Number of Residues4
Detailsbinding site for residue EDO B 906
ChainResidue
AHIS813
BTYR701
BGLU702
BASN703

site_idAD8
Number of Residues7
Detailsbinding site for residue EDO B 907
ChainResidue
BLEU748
BGLY772
BILE773
BARG775
BHOH1141
BHOH1180
BHOH1384

site_idAD9
Number of Residues5
Detailsbinding site for residue EDO B 908
ChainResidue
BARG794
BSER826
BALA827
BPRO828
BHOH1147

site_idAE1
Number of Residues9
Detailsbinding site for residue EDO B 909
ChainResidue
BPRO799
BALA800
BARG803
BGLY809
BGLN810
BHOH1184
BHOH1224
BHOH1264
BHOH1419

site_idAE2
Number of Residues9
Detailsbinding site for residue EDO B 910
ChainResidue
BALA562
BTHR563
BTHR798
BPRO799
BLEU805
BGLN821
BGLY822
BHOH1113
BHOH1420

site_idAE3
Number of Residues6
Detailsbinding site for residue ACY B 911
ChainResidue
BTYR564
BPRO801
BGLN821
BHOH1113
BHOH1382
BHOH1405

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:25225612, ECO:0007744|PDB:4TMV, ECO:0007744|PDB:4TMW, ECO:0007744|PDB:4TMX
ChainResidueDetails
AASN533
AGLY555
BASN533
BGLY555

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:25225612
ChainResidueDetails
ATHR537
AGLN549
ATHR557
BTHR537
BGLN549
BTHR557

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:24686316, ECO:0000269|PubMed:25225612
ChainResidueDetails
AASN648
AALA717
BASN648
BALA717

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PDB entries from 2024-07-24

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