Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4S2Y

Structure of E. coli RppH bound to RNA and three magnesium ions

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0000290biological_processdeadenylation-dependent decapping of nuclear-transcribed mRNA
A0000932cellular_componentP-body
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006402biological_processmRNA catabolic process
A0008033biological_processtRNA processing
A0016462molecular_functionpyrophosphatase activity
A0016787molecular_functionhydrolase activity
A0016818molecular_functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
A0034353molecular_functionmRNA 5'-diphosphatase activity
A0050779biological_processRNA destabilization
A0110153molecular_functionRNA NAD-cap (NMN-forming) hydrolase activity
A0110154biological_processRNA decapping
A0110155biological_processNAD-cap decapping
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MG A 201
ChainResidue
AGLU54
AGLU58
AGLU121
AMG202
AHOH308
BAPC1
BMG101
BHOH201

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 202
ChainResidue
AGLU58
AGLU121
AMG201
AHOH310
BAPC1
AGLN38

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 203
ChainResidue
AASN18
AARG19
AARG19
AGLN20

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 204
ChainResidue
AALA47
AGLU48
ALYS99
AHOH398

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 101
ChainResidue
AGLU54
AMG201
AHOH314
AHOH316
BAPC1
BHOH201
BHOH202

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GginpgEsaeqAMyRELfEEvG
ChainResidueDetails
AGLY39-GLY60

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon