4S2Y
Structure of E. coli RppH bound to RNA and three magnesium ions
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-06-09 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 79.631, 36.484, 58.073 |
Unit cell angles | 90.00, 102.30, 90.00 |
Refinement procedure
Resolution | 19.451 - 1.600 |
R-factor | 0.1735 |
Rwork | 0.172 |
R-free | 0.19850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4s2w |
RMSD bond length | 0.007 |
RMSD bond angle | 1.016 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.700 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.050 | 0.643 |
Number of reflections | 21065 | |
<I/σ(I)> | 2.71 | |
Completeness [%] | 96.7 | 90.6 |
Redundancy | 5.4 | 5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 295 | crystal growth: 0.4 M ammonium sulfate, 12% PEG 3350, 10% glycerol. crystal soaking and cross-linking: 0.02 M sodium acetate pH 5.0, 0.2 sodium sulfate, 15% PEG 3350, 15% glycerol. crystal soaking and cryoprotection: 0.05 M MOPS-Na pH 7.0, 0.025 M magnesium chloride, 15% PEG 3350, 25% pentaerythritol propoxylate 5/4 PO/OH, VAPOR DIFFUSION, HANGING DROP, temperature 295K |