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4RZM

Crystal structure of the Lsd19-lasalocid A complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0016853molecular_functionisomerase activity
A0017000biological_processantibiotic biosynthetic process
B0016853molecular_functionisomerase activity
B0017000biological_processantibiotic biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE LSD A 301
ChainResidue
AASP170
ATRP270
AHOH437
BHIS232
BHOH452
ASER174
ATRP175
ATRP175
AARG177
AHIS186
ASER224
AHIS231
ATYR251

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 302
ChainResidue
AHIS146
AASP170
AGLU197
ATYR251
AMET253
AMET266

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT A 303
ChainResidue
AGLU65
ALEU81

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT A 304
ChainResidue
ATYR14
AASP38
AGLU65

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE FMT A 305
ChainResidue
AASP38

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 306
ChainResidue
AVAL123
ASER126
ATHR129
AHOH449
AHOH451

site_idAC7
Number of Residues13
DetailsBINDING SITE FOR RESIDUE LSD B 301
ChainResidue
AHIS232
BASP170
BSER174
BTRP175
BTRP175
BARG177
BHIS186
BSER224
BLEU228
BHIS231
BLEU233
BTYR251
BHOH422

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 302
ChainResidue
BHIS146
BASP170
BGLU197
BTYR251
BMET253
BMET266

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT B 303
ChainResidue
BTHR198
BGLY200
BTHR214
BSER216
BHOH423

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT B 304
ChainResidue
BHIS0
BGLU110

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT B 305
ChainResidue
BGLU65
BLEU81

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT B 306
ChainResidue
AHIS74
BHIS232
BALA272
BNA308
BHOH420
BHOH429

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT B 307
ChainResidue
AHIS232
BHIS74
BNA308
BHOH419
BHOH439

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA B 308
ChainResidue
AHIS232
BHIS232
BFMT306
BFMT307

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 309
ChainResidue
BVAL123
BSER126
BTHR129
BHOH465
BHOH466

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor; for 5-exo epoxide-opening cyclization activity => ECO:0000269|PubMed:22388816
ChainResidueDetails
AASP38
BASP38

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor; for 6-endo epoxide-opening cyclization activity => ECO:0000269|PubMed:22388816
ChainResidueDetails
AASP170
BASP170

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:22388816
ChainResidueDetails
ATYR14
BARG177
BGLU197
BTYR251
AGLU65
AHIS146
AARG177
AGLU197
ATYR251
BTYR14
BGLU65
BHIS146

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Raises pKa of active site Asp-38
ChainResidueDetails
AARG54
BARG54

site_idSWS_FT_FI5
Number of Residues2
DetailsSITE: Raises pKa of active site Asp-170
ChainResidueDetails
AHIS186
BHIS186

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PDB entries from 2024-11-13

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