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4RW3

Structural insights into substrate binding of brown spider venom class II phospholipases D

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0006629biological_processlipid metabolic process
A0008081molecular_functionphosphoric diester hydrolase activity
A0016042biological_processlipid catabolic process
A0016829molecular_functionlyase activity
A0031640biological_processkilling of cells of another organism
A0035821biological_processmodulation of process of another organism
A0046872molecular_functionmetal ion binding
A0090729molecular_functiontoxin activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 301
ChainResidue
AGLU32
AASP34
AASP92
AIPD304
AHOH410

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 302
ChainResidue
ASER203
AGLY122
AASN123
AGLY201
ALEU202

site_idAC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PEG A 303
ChainResidue
ATYR45

site_idAC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE IPD A 304
ChainResidue
AHIS12
AGLU32
AASP34
AHIS48
AASP92
ALYS94
ASER167
ATYR223
ATRP225
AMG301
AHOH410
AHOH441
AHOH474
AHOH485
AHOH506

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 305
ChainResidue
AGLY168
AASN169
AASP170

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE OCA A 306
ChainResidue
AALA259
ALYS263
APLM310
AHOH422

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SHV A 307
ChainResidue
AGLY176
AILE184
APHE218

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE DKA A 308
ChainResidue
APRO51
ACYS52

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PLM A 309
ChainResidue
AASN196
AASP228
ALYS229
ATYR248

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PLM A 310
ChainResidue
AASN257
ALYS262
AOCA306

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PLM A 311
ChainResidue
AASN40
AASP105
ALYS108
ALYS109
ALYS112

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE DKA A 312
ChainResidue
ALYS147
AILE184
AHOH469

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TDA A 313
ChainResidue
AASN138
ATYR140
ALYS181

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:25961401
ChainResidueDetails
AHIS12

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Nucleophile => ECO:0000305|PubMed:25961401
ChainResidueDetails
AHIS48

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:25961401, ECO:0000312|PDB:4RW3, ECO:0000312|PDB:4RW5
ChainResidueDetails
AGLU32
AASP34
AASP92

225399

PDB entries from 2024-09-25

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