4RSZ
The X-ray structure of the Primary Adduct formed in the Reaction between Cisplatin and Cytochrome c
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005515 | molecular_function | protein binding |
A | 0005739 | cellular_component | mitochondrion |
A | 0005758 | cellular_component | mitochondrial intermembrane space |
A | 0005829 | cellular_component | cytosol |
A | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
A | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
A | 0006915 | biological_process | apoptotic process |
A | 0008289 | molecular_function | lipid binding |
A | 0009055 | molecular_function | electron transfer activity |
A | 0018063 | biological_process | cytochrome c-heme linkage |
A | 0020037 | molecular_function | heme binding |
A | 0042802 | molecular_function | identical protein binding |
A | 0043065 | biological_process | positive regulation of apoptotic process |
A | 0043280 | biological_process | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
A | 0046872 | molecular_function | metal ion binding |
A | 0070069 | cellular_component | cytochrome complex |
A | 0070469 | cellular_component | respirasome |
A | 2001056 | biological_process | positive regulation of cysteine-type endopeptidase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005739 | cellular_component | mitochondrion |
B | 0005758 | cellular_component | mitochondrial intermembrane space |
B | 0005829 | cellular_component | cytosol |
B | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
B | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
B | 0006915 | biological_process | apoptotic process |
B | 0008289 | molecular_function | lipid binding |
B | 0009055 | molecular_function | electron transfer activity |
B | 0018063 | biological_process | cytochrome c-heme linkage |
B | 0020037 | molecular_function | heme binding |
B | 0042802 | molecular_function | identical protein binding |
B | 0043065 | biological_process | positive regulation of apoptotic process |
B | 0043280 | biological_process | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
B | 0046872 | molecular_function | metal ion binding |
B | 0070069 | cellular_component | cytochrome complex |
B | 0070469 | cellular_component | respirasome |
B | 2001056 | biological_process | positive regulation of cysteine-type endopeptidase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005739 | cellular_component | mitochondrion |
C | 0005758 | cellular_component | mitochondrial intermembrane space |
C | 0005829 | cellular_component | cytosol |
C | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
C | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
C | 0006915 | biological_process | apoptotic process |
C | 0008289 | molecular_function | lipid binding |
C | 0009055 | molecular_function | electron transfer activity |
C | 0018063 | biological_process | cytochrome c-heme linkage |
C | 0020037 | molecular_function | heme binding |
C | 0042802 | molecular_function | identical protein binding |
C | 0043065 | biological_process | positive regulation of apoptotic process |
C | 0043280 | biological_process | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
C | 0046872 | molecular_function | metal ion binding |
C | 0070069 | cellular_component | cytochrome complex |
C | 0070469 | cellular_component | respirasome |
C | 2001056 | biological_process | positive regulation of cysteine-type endopeptidase activity |
D | 0005515 | molecular_function | protein binding |
D | 0005739 | cellular_component | mitochondrion |
D | 0005758 | cellular_component | mitochondrial intermembrane space |
D | 0005829 | cellular_component | cytosol |
D | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
D | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
D | 0006915 | biological_process | apoptotic process |
D | 0008289 | molecular_function | lipid binding |
D | 0009055 | molecular_function | electron transfer activity |
D | 0018063 | biological_process | cytochrome c-heme linkage |
D | 0020037 | molecular_function | heme binding |
D | 0042802 | molecular_function | identical protein binding |
D | 0043065 | biological_process | positive regulation of apoptotic process |
D | 0043280 | biological_process | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
D | 0046872 | molecular_function | metal ion binding |
D | 0070069 | cellular_component | cytochrome complex |
D | 0070469 | cellular_component | respirasome |
D | 2001056 | biological_process | positive regulation of cysteine-type endopeptidase activity |
E | 0005515 | molecular_function | protein binding |
E | 0005739 | cellular_component | mitochondrion |
E | 0005758 | cellular_component | mitochondrial intermembrane space |
E | 0005829 | cellular_component | cytosol |
E | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
E | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
E | 0006915 | biological_process | apoptotic process |
E | 0008289 | molecular_function | lipid binding |
E | 0009055 | molecular_function | electron transfer activity |
E | 0018063 | biological_process | cytochrome c-heme linkage |
E | 0020037 | molecular_function | heme binding |
E | 0042802 | molecular_function | identical protein binding |
E | 0043065 | biological_process | positive regulation of apoptotic process |
E | 0043280 | biological_process | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
E | 0046872 | molecular_function | metal ion binding |
E | 0070069 | cellular_component | cytochrome complex |
E | 0070469 | cellular_component | respirasome |
E | 2001056 | biological_process | positive regulation of cysteine-type endopeptidase activity |
F | 0005515 | molecular_function | protein binding |
F | 0005739 | cellular_component | mitochondrion |
F | 0005758 | cellular_component | mitochondrial intermembrane space |
F | 0005829 | cellular_component | cytosol |
F | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
F | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
F | 0006915 | biological_process | apoptotic process |
F | 0008289 | molecular_function | lipid binding |
F | 0009055 | molecular_function | electron transfer activity |
F | 0018063 | biological_process | cytochrome c-heme linkage |
F | 0020037 | molecular_function | heme binding |
F | 0042802 | molecular_function | identical protein binding |
F | 0043065 | biological_process | positive regulation of apoptotic process |
F | 0043280 | biological_process | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
F | 0046872 | molecular_function | metal ion binding |
F | 0070069 | cellular_component | cytochrome complex |
F | 0070469 | cellular_component | respirasome |
F | 2001056 | biological_process | positive regulation of cysteine-type endopeptidase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE HEC A 201 |
Chain | Residue |
A | LYS13 |
A | TYR48 |
A | THR49 |
A | ASN52 |
A | TRP59 |
A | TYR67 |
A | LEU68 |
A | THR78 |
A | LYS79 |
A | MET80 |
A | ILE81 |
A | CYS14 |
A | PHE82 |
A | LEU94 |
A | HOH305 |
A | CYS17 |
A | HIS18 |
A | THR28 |
A | PRO30 |
A | ARG38 |
A | THR40 |
A | GLY41 |
site_id | AC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CPT A 202 |
Chain | Residue |
A | GLU61 |
A | MET65 |
A | GLU92 |
site_id | AC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE NO3 A 203 |
Chain | Residue |
A | PHE10 |
A | THR19 |
A | VAL20 |
A | GLU21 |
A | HOH310 |
C | THR28 |
C | ILE81 |
C | HOH302 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NO3 A 204 |
Chain | Residue |
A | PHE82 |
A | ALA83 |
A | GLY84 |
B | LYS8 |
B | VAL11 |
B | GLN12 |
site_id | AC5 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE HEC B 201 |
Chain | Residue |
B | LYS13 |
B | CYS14 |
B | GLN16 |
B | CYS17 |
B | HIS18 |
B | THR28 |
B | GLY29 |
B | PRO30 |
B | THR40 |
B | GLY41 |
B | TYR48 |
B | THR49 |
B | ASN52 |
B | TRP59 |
B | TYR67 |
B | LEU68 |
B | THR78 |
B | LYS79 |
B | MET80 |
B | LEU94 |
B | HOH307 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 B 202 |
Chain | Residue |
A | LYS72 |
B | LYS100 |
B | GLU104 |
E | GLY23 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CPT B 203 |
Chain | Residue |
B | GLU61 |
B | GLU62 |
B | MET65 |
B | GLU92 |
E | GLU62 |
site_id | AC8 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE NO3 B 204 |
Chain | Residue |
A | THR28 |
A | ILE81 |
B | PHE10 |
B | THR19 |
B | VAL20 |
B | GLU21 |
B | HOH306 |
B | HOH318 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NO3 B 205 |
Chain | Residue |
B | PHE82 |
B | ALA83 |
B | GLY84 |
C | LYS8 |
C | VAL11 |
C | GLN12 |
site_id | BC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NO3 B 206 |
Chain | Residue |
B | GLY41 |
B | PHE46 |
B | THR47 |
B | TYR48 |
site_id | BC2 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE HEC C 201 |
Chain | Residue |
C | ASN52 |
C | TRP59 |
C | TYR67 |
C | LEU68 |
C | THR78 |
C | LYS79 |
C | MET80 |
C | ILE81 |
C | LEU94 |
C | HOH308 |
C | LYS13 |
C | CYS14 |
C | GLN16 |
C | CYS17 |
C | HIS18 |
C | THR28 |
C | PRO30 |
C | ARG38 |
C | THR40 |
C | GLY41 |
C | TYR48 |
C | THR49 |
site_id | BC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE NO3 C 202 |
Chain | Residue |
B | THR28 |
B | ILE81 |
C | PHE10 |
C | THR19 |
C | VAL20 |
C | GLU21 |
C | HOH304 |
C | HOH305 |
site_id | BC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NO3 C 203 |
Chain | Residue |
A | LYS8 |
A | VAL11 |
A | GLN12 |
C | PHE82 |
C | ALA83 |
C | GLY84 |
site_id | BC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE NO3 C 204 |
Chain | Residue |
B | ALA83 |
C | GLU4 |
C | LYS7 |
site_id | BC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE NO3 C 205 |
Chain | Residue |
C | PHE36 |
C | LYS99 |
F | LYS22 |
site_id | BC7 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE HEC D 201 |
Chain | Residue |
D | LYS13 |
D | CYS14 |
D | GLN16 |
D | CYS17 |
D | HIS18 |
D | THR28 |
D | GLY29 |
D | PRO30 |
D | ARG38 |
D | GLY41 |
D | TYR48 |
D | THR49 |
D | ASN52 |
D | TRP59 |
D | TYR67 |
D | LEU68 |
D | THR78 |
D | LYS79 |
D | MET80 |
D | LEU94 |
D | HOH301 |
site_id | BC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CPT D 202 |
Chain | Residue |
A | GLU61 |
D | GLU61 |
D | GLU62 |
D | MET65 |
D | GLU92 |
site_id | BC9 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE NO3 D 203 |
Chain | Residue |
D | PHE10 |
D | THR19 |
D | VAL20 |
D | GLU21 |
D | HOH310 |
D | HOH318 |
F | THR28 |
F | ILE81 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NO3 D 204 |
Chain | Residue |
D | PHE82 |
D | ALA83 |
D | GLY84 |
E | LYS8 |
E | VAL11 |
E | GLN12 |
site_id | CC2 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE HEC E 201 |
Chain | Residue |
E | LYS13 |
E | CYS14 |
E | CYS17 |
E | HIS18 |
E | THR28 |
E | GLY29 |
E | ARG38 |
E | THR40 |
E | GLY41 |
E | TYR48 |
E | THR49 |
E | ASN52 |
E | TRP59 |
E | TYR67 |
E | LEU68 |
E | THR78 |
E | LYS79 |
E | MET80 |
E | LEU94 |
E | HOH301 |
site_id | CC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CPT E 202 |
Chain | Residue |
E | MET65 |
site_id | CC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE NO3 E 203 |
Chain | Residue |
E | HIS26 |
E | PRO30 |
E | ASN31 |
E | ALA43 |
E | PRO44 |
E | GLY45 |
E | PHE46 |
site_id | CC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NO3 E 204 |
Chain | Residue |
E | PHE82 |
E | ALA83 |
E | GLY84 |
F | LYS8 |
F | VAL11 |
F | GLN12 |
site_id | CC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE NO3 E 205 |
Chain | Residue |
D | THR28 |
D | ILE81 |
E | PHE10 |
E | THR19 |
E | VAL20 |
E | GLU21 |
E | HOH309 |
site_id | CC7 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE HEC F 201 |
Chain | Residue |
F | LYS13 |
F | CYS14 |
F | GLN16 |
F | CYS17 |
F | HIS18 |
F | THR28 |
F | GLY29 |
F | PRO30 |
F | ARG38 |
F | THR40 |
F | GLY41 |
F | TYR48 |
F | THR49 |
F | ASN52 |
F | TRP59 |
F | TYR67 |
F | THR78 |
F | LYS79 |
F | MET80 |
F | ILE81 |
F | LEU94 |
F | HOH311 |
site_id | CC8 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE SO4 F 202 |
Chain | Residue |
D | LYS25 |
D | LYS27 |
E | LYS25 |
E | LYS27 |
F | GLN16 |
F | LYS25 |
F | LYS27 |
F | HOH303 |
F | HOH304 |
F | HOH308 |
site_id | CC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CPT F 203 |
Chain | Residue |
F | GLU61 |
F | MET65 |
F | GLU92 |
site_id | DC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE NO3 F 204 |
Chain | Residue |
E | THR28 |
E | ILE81 |
E | HOH312 |
F | THR19 |
F | VAL20 |
F | GLU21 |
F | HOH313 |
site_id | DC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NO3 F 205 |
Chain | Residue |
D | LYS8 |
D | VAL11 |
D | GLN12 |
F | PHE82 |
F | ALA83 |
F | GLY84 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 12 |
Details | BINDING: covalent |
Chain | Residue | Details |
A | CYS14 | |
E | CYS17 | |
F | CYS14 | |
F | CYS17 | |
A | CYS17 | |
B | CYS14 | |
B | CYS17 | |
C | CYS14 | |
C | CYS17 | |
D | CYS14 | |
D | CYS17 | |
E | CYS14 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | BINDING: axial binding residue => ECO:0000255|PROSITE-ProRule:PRU00433, ECO:0000269|PubMed:5545094 |
Chain | Residue | Details |
A | HIS18 | |
B | HIS18 | |
C | HIS18 | |
D | HIS18 | |
E | HIS18 | |
F | HIS18 |
site_id | SWS_FT_FI3 |
Number of Residues | 6 |
Details | BINDING: axial binding residue |
Chain | Residue | Details |
A | MET80 | |
B | MET80 | |
C | MET80 | |
D | MET80 | |
E | MET80 | |
F | MET80 |
site_id | SWS_FT_FI4 |
Number of Residues | 6 |
Details | MOD_RES: N-acetylglycine => ECO:0000269|PubMed:14469771 |
Chain | Residue | Details |
A | GLY1 | |
B | GLY1 | |
C | GLY1 | |
D | GLY1 | |
E | GLY1 | |
F | GLY1 |
site_id | SWS_FT_FI5 |
Number of Residues | 12 |
Details | MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P62894 |
Chain | Residue | Details |
A | TYR48 | |
E | TYR97 | |
F | TYR48 | |
F | TYR97 | |
A | TYR97 | |
B | TYR48 | |
B | TYR97 | |
C | TYR48 | |
C | TYR97 | |
D | TYR48 | |
D | TYR97 | |
E | TYR48 |
site_id | SWS_FT_FI6 |
Number of Residues | 6 |
Details | MOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P62897 |
Chain | Residue | Details |
A | LYS55 | |
B | LYS55 | |
C | LYS55 | |
D | LYS55 | |
E | LYS55 | |
F | LYS55 |
site_id | SWS_FT_FI7 |
Number of Residues | 6 |
Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62897 |
Chain | Residue | Details |
A | LYS72 | |
B | LYS72 | |
C | LYS72 | |
D | LYS72 | |
E | LYS72 | |
F | LYS72 |
site_id | SWS_FT_FI8 |
Number of Residues | 6 |
Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P62897 |
Chain | Residue | Details |
A | LYS99 | |
B | LYS99 | |
C | LYS99 | |
D | LYS99 | |
E | LYS99 | |
F | LYS99 |