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4RN5

B1 domain of human Neuropilin-1 with acetate ion in a ligand-binding site

Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT A 501
ChainResidue
ATRP301
ASER346
ATHR349
ATYR353
AARG402
AHOH643

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 502
ChainResidue
AHOH685
AGLY270
AHIS287
AGLU319

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 503
ChainResidue
AASP289
AASP320
AHOH755
AHOH756
AHOH757
AHOH759

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 504
ChainResidue
ALEU279
AGLU285
AGLN290
ALEU330
AARG334
AHOH679
AHOH713

Functional Information from PROSITE/UniProt
site_idPS01285
Number of Residues30
DetailsFA58C_1 Coagulation factors 5/8 type C domain (FA58C) signature 1. GWtpgedsyre......WIqVDlgllrfVtaVgTQG
ChainResidueDetails
AGLY314-GLY343

site_idPS01286
Number of Residues17
DetailsFA58C_2 Coagulation factors 5/8 type C domain (FA58C) signature 2. Patwetgis..MRfEVyGC
ChainResidueDetails
APRO408-CYS424

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues149
DetailsDomain: {"description":"F5/8 type C 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00081","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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