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4QM6

Structure of bacterial polynucleotide kinase bound to GTP and RNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0002098biological_processtRNA wobble uridine modification
A0006357biological_processregulation of transcription by RNA polymerase II
B0002098biological_processtRNA wobble uridine modification
B0006357biological_processregulation of transcription by RNA polymerase II
Functional Information from PDB Data
site_idAC1
Number of Residues24
DetailsBINDING SITE FOR RESIDUE GTP A 1001
ChainResidue
ASER16
AARG116
AARG120
AARG123
AMG1002
AHOH1105
AHOH1124
AHOH1125
AHOH1132
AHOH1156
AHOH1170
ASER17
AHOH1203
AHOH1216
AHOH1279
AHOH1303
CC1
AGLY18
ASER19
AGLY20
ALYS21
ASER22
ATHR23
AASN38

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1002
ChainResidue
ASER22
AGTP1001
AHOH1124
AHOH1125
AHOH1132

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 A 1003
ChainResidue
AARG131
AHOH1147
AHOH1224
BTYR63
BLYS67
BGLN70
BHOH1198
CG4

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA A 1004
ChainResidue
AARG87
ASER140
AHOH1287
AHOH1333

site_idAC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE GTP B 1001
ChainResidue
BSER16
BSER17
BGLY18
BSER19
BGLY20
BLYS21
BSER22
BTHR23
BASN38
BARG116
BARG120
BARG123
BMG1002
BHOH1109
BHOH1124
BHOH1129
BHOH1141
BHOH1182
BHOH1193
BHOH1251
DC1

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 1002
ChainResidue
BSER22
BGTP1001
BHOH1109
BHOH1124
BHOH1129

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA B 1003
ChainResidue
BGLU110
BARG131
BGLN135
BHOH1185

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA B 1004
ChainResidue
BASN49
BGLN124
BVAL125
BHOH1321
BHOH1327
DHOH108

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA B 1005
ChainResidue
AARG146
AHOH1241
BGLU160
BHOH1191

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA B 1006
ChainResidue
AHOH1336
BGLY55
BASP59

222415

PDB entries from 2024-07-10

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