4QKF
Crystal structure of human ALKBH7 in complex with N-oxalylglycine and Mn(II)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005515 | molecular_function | protein binding |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0005759 | cellular_component | mitochondrial matrix |
| A | 0006631 | biological_process | fatty acid metabolic process |
| A | 0006974 | biological_process | DNA damage response |
| A | 0010883 | biological_process | regulation of lipid storage |
| A | 0012501 | biological_process | programmed cell death |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0051213 | molecular_function | dioxygenase activity |
| A | 1902445 | biological_process | regulation of mitochondrial membrane permeability involved in programmed necrotic cell death |
| B | 0005515 | molecular_function | protein binding |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0005759 | cellular_component | mitochondrial matrix |
| B | 0006631 | biological_process | fatty acid metabolic process |
| B | 0006974 | biological_process | DNA damage response |
| B | 0010883 | biological_process | regulation of lipid storage |
| B | 0012501 | biological_process | programmed cell death |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0051213 | molecular_function | dioxygenase activity |
| B | 1902445 | biological_process | regulation of mitochondrial membrane permeability involved in programmed necrotic cell death |
| C | 0005515 | molecular_function | protein binding |
| C | 0005739 | cellular_component | mitochondrion |
| C | 0005759 | cellular_component | mitochondrial matrix |
| C | 0006631 | biological_process | fatty acid metabolic process |
| C | 0006974 | biological_process | DNA damage response |
| C | 0010883 | biological_process | regulation of lipid storage |
| C | 0012501 | biological_process | programmed cell death |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0051213 | molecular_function | dioxygenase activity |
| C | 1902445 | biological_process | regulation of mitochondrial membrane permeability involved in programmed necrotic cell death |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MN A 300 |
| Chain | Residue |
| A | HIS121 |
| A | ASP123 |
| A | HIS177 |
| A | OGA301 |
| site_id | AC2 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE OGA A 301 |
| Chain | Residue |
| A | ARG197 |
| A | SER199 |
| A | ARG203 |
| A | MN300 |
| A | HOH430 |
| A | HIS108 |
| A | HIS121 |
| A | TYR165 |
| A | HIS177 |
| A | ILE179 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MN B 300 |
| Chain | Residue |
| A | HOH449 |
| B | HIS121 |
| B | ASP123 |
| B | HIS177 |
| B | HOH426 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MN C 301 |
| Chain | Residue |
| C | HIS121 |
| C | ASP123 |
| C | HIS177 |
| C | OGA302 |
| site_id | AC5 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE OGA C 302 |
| Chain | Residue |
| C | ILE70 |
| C | LEU110 |
| C | ILE118 |
| C | HIS121 |
| C | ASP123 |
| C | TYR165 |
| C | HIS177 |
| C | ARG197 |
| C | SER199 |
| C | ILE201 |
| C | ARG203 |
| C | MN301 |
| C | HOH457 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MN C 303 |
| Chain | Residue |
| A | GLU189 |
| B | GLU189 |
| C | GLU189 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 9 |
| Details | BINDING: BINDING => ECO:0000305|PubMed:25122757 |
| Chain | Residue | Details |
| A | HIS121 | |
| A | ASP123 | |
| A | HIS177 | |
| B | HIS121 | |
| B | ASP123 | |
| B | HIS177 | |
| C | HIS121 | |
| C | ASP123 | |
| C | HIS177 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | BINDING: |
| Chain | Residue | Details |
| A | TYR165 | |
| A | ARG203 | |
| B | TYR165 | |
| B | ARG203 | |
| C | TYR165 | |
| C | ARG203 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 3 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:25122757 |
| Chain | Residue | Details |
| A | ARG197 | |
| B | ARG197 | |
| C | ARG197 |
