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4QF4

Crystal structure of Staphylococcal nuclease variant V23M at cryogenic temperature

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004518molecular_functionnuclease activity
B0003676molecular_functionnucleic acid binding
B0004518molecular_functionnuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE THP A 201
ChainResidue
AARG35
ATYR113
ATYR115
ACA202
AHOH301
AHOH310
AHOH330
AHOH337
AHOH340
ALEU36
AASP40
ALYS71
AASP83
ALYS84
ATYR85
AARG87
ALEU89

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 202
ChainResidue
AASP21
AASP40
ATHR41
ATHP201
AHOH320
AHOH330
AHOH331

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 A 203
ChainResidue
AMET32
ATHR82

site_idAC4
Number of Residues16
DetailsBINDING SITE FOR RESIDUE THP B 201
ChainResidue
BARG35
BLEU36
BASP40
BLYS71
BASP83
BLYS84
BTYR85
BARG87
BLEU89
BTYR113
BTYR115
BCA202
BHOH301
BHOH310
BHOH311
BHOH344

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 202
ChainResidue
BASP21
BASP40
BTHR41
BTHP201
BHOH311
BHOH322
BHOH325

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PO4 B 203
ChainResidue
BTYR27

Functional Information from PROSITE/UniProt
site_idPS01123
Number of Residues25
DetailsTNASE_1 Thermonuclease family signature 1. DGDTMkLmykgqpmtf.RLllVDtPE
ChainResidueDetails
AASP19-GLU43

site_idPS01284
Number of Residues11
DetailsTNASE_2 Thermonuclease family signature 2. DKYGRgLAyIY
ChainResidueDetails
AASP83-TYR93

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues32
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsActive site: {"evidences":[{"source":"PubMed","id":"288045","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsBinding site: {}
ChainResidueDetails

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 165
ChainResidueDetails
AASP21metal ligand
AARG35electrostatic stabiliser, hydrogen bond donor
AASP40metal ligand
ATHR41metal ligand
AGLU43hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AARG87electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA2
Number of Residues6
DetailsM-CSA 165
ChainResidueDetails
BASP21metal ligand
BARG35electrostatic stabiliser, hydrogen bond donor
BASP40metal ligand
BTHR41metal ligand
BGLU43hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BARG87electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

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PDB entries from 2026-02-25

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