4Q3R
Crystal structure of Schistosoma mansoni arginase in complex with inhibitor ABHDP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000050 | biological_process | urea cycle |
| A | 0004053 | molecular_function | arginase activity |
| A | 0005634 | cellular_component | nucleus |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006525 | biological_process | arginine metabolic process |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0016813 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines |
| A | 0019547 | biological_process | arginine catabolic process to ornithine |
| A | 0030145 | molecular_function | manganese ion binding |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000050 | biological_process | urea cycle |
| B | 0004053 | molecular_function | arginase activity |
| B | 0005634 | cellular_component | nucleus |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006525 | biological_process | arginine metabolic process |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0016813 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines |
| B | 0019547 | biological_process | arginine catabolic process to ornithine |
| B | 0030145 | molecular_function | manganese ion binding |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000050 | biological_process | urea cycle |
| C | 0004053 | molecular_function | arginase activity |
| C | 0005634 | cellular_component | nucleus |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0006525 | biological_process | arginine metabolic process |
| C | 0016787 | molecular_function | hydrolase activity |
| C | 0016813 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines |
| C | 0019547 | biological_process | arginine catabolic process to ornithine |
| C | 0030145 | molecular_function | manganese ion binding |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000050 | biological_process | urea cycle |
| D | 0004053 | molecular_function | arginase activity |
| D | 0005634 | cellular_component | nucleus |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005829 | cellular_component | cytosol |
| D | 0006525 | biological_process | arginine metabolic process |
| D | 0016787 | molecular_function | hydrolase activity |
| D | 0016813 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines |
| D | 0019547 | biological_process | arginine catabolic process to ornithine |
| D | 0030145 | molecular_function | manganese ion binding |
| D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN A 401 |
| Chain | Residue |
| A | HIS131 |
| A | ASP154 |
| A | ASP158 |
| A | ASP262 |
| A | MN402 |
| A | XA2407 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN A 402 |
| Chain | Residue |
| A | ASP264 |
| A | MN401 |
| A | XA2407 |
| A | ASP154 |
| A | HIS156 |
| A | ASP262 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CS A 403 |
| Chain | Residue |
| A | TYR227 |
| A | ASP232 |
| A | CL406 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CS A 404 |
| Chain | Residue |
| A | GLY313 |
| A | HOH737 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CS A 405 |
| Chain | Residue |
| A | ARG48 |
| A | LYS49 |
| A | SER50 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CL A 406 |
| Chain | Residue |
| A | TYR227 |
| A | PHE228 |
| A | CS403 |
| A | HOH691 |
| A | HOH735 |
| site_id | AC7 |
| Number of Residues | 23 |
| Details | BINDING SITE FOR RESIDUE XA2 A 407 |
| Chain | Residue |
| A | GLU58 |
| A | HIS131 |
| A | ASP154 |
| A | HIS156 |
| A | ASP158 |
| A | ASN160 |
| A | SER167 |
| A | HIS171 |
| A | ASP211 |
| A | ASP213 |
| A | ASP262 |
| A | ASP264 |
| A | THR276 |
| A | GLU307 |
| A | MN401 |
| A | MN402 |
| A | HOH536 |
| A | HOH537 |
| A | HOH553 |
| A | HOH627 |
| A | HOH630 |
| A | HOH640 |
| A | HOH655 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 408 |
| Chain | Residue |
| A | GLU76 |
| A | ASP79 |
| A | PRO80 |
| A | GLN81 |
| A | LYS86 |
| A | TRP87 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL A 409 |
| Chain | Residue |
| A | ASN32 |
| A | GLU73 |
| A | HOH645 |
| site_id | BC1 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE PGE A 410 |
| Chain | Residue |
| A | ARG252 |
| A | LEU253 |
| A | GLU254 |
| A | THR297 |
| A | LYS299 |
| B | ARG252 |
| B | LEU253 |
| B | GLU254 |
| B | THR297 |
| B | LYS299 |
| site_id | BC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN B 401 |
| Chain | Residue |
| B | HIS131 |
| B | ASP154 |
| B | ASP158 |
| B | ASP262 |
| B | MN402 |
| B | XA2409 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN B 402 |
| Chain | Residue |
| B | ASP154 |
| B | HIS156 |
| B | ASP262 |
| B | ASP264 |
| B | MN401 |
| B | XA2409 |
| site_id | BC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CS B 403 |
| Chain | Residue |
| B | TYR227 |
| B | ASP232 |
| B | CL407 |
| site_id | BC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CS B 404 |
| Chain | Residue |
| B | LEU311 |
| B | GLY313 |
| site_id | BC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CS B 405 |
| Chain | Residue |
| B | ARG48 |
| B | SER50 |
| B | CL408 |
| site_id | BC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CS B 406 |
| Chain | Residue |
| A | ASP350 |
| B | ASP190 |
| site_id | BC8 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL B 407 |
| Chain | Residue |
| B | TYR227 |
| B | CS403 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 408 |
| Chain | Residue |
| B | LYS49 |
| B | SER50 |
| B | CS405 |
| site_id | CC1 |
| Number of Residues | 21 |
| Details | BINDING SITE FOR RESIDUE XA2 B 409 |
| Chain | Residue |
| B | ASN160 |
| B | SER167 |
| B | HIS171 |
| B | ASP211 |
| B | ASP213 |
| B | ASP262 |
| B | ASP264 |
| B | THR276 |
| B | GLU307 |
| B | MN401 |
| B | MN402 |
| B | HOH512 |
| B | HOH523 |
| B | HOH540 |
| B | HOH575 |
| B | HOH628 |
| B | GLU58 |
| B | HIS131 |
| B | ASP154 |
| B | HIS156 |
| B | ASP158 |
| site_id | CC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL B 410 |
| Chain | Residue |
| B | ASP79 |
| B | PRO80 |
| B | GLN81 |
| B | LYS86 |
| B | TRP87 |
| site_id | CC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 411 |
| Chain | Residue |
| B | ASN32 |
| B | GLU73 |
| B | HOH663 |
| site_id | CC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN C 401 |
| Chain | Residue |
| C | HIS131 |
| C | ASP154 |
| C | ASP158 |
| C | ASP262 |
| C | MN402 |
| C | XA2407 |
| site_id | CC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN C 402 |
| Chain | Residue |
| C | ASP154 |
| C | HIS156 |
| C | ASP262 |
| C | ASP264 |
| C | MN401 |
| C | XA2407 |
| site_id | CC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CS C 403 |
| Chain | Residue |
| C | TYR227 |
| C | ASP232 |
| C | CL405 |
| site_id | CC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CS C 404 |
| Chain | Residue |
| C | ARG48 |
| C | LYS49 |
| C | SER50 |
| site_id | CC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL C 405 |
| Chain | Residue |
| C | TYR227 |
| C | CS403 |
| C | HOH550 |
| site_id | CC9 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CS C 406 |
| Chain | Residue |
| C | LEU311 |
| C | GLY313 |
| site_id | DC1 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE XA2 C 407 |
| Chain | Residue |
| C | GLU58 |
| C | HIS131 |
| C | ASP154 |
| C | HIS156 |
| C | ASP158 |
| C | ASN160 |
| C | SER167 |
| C | HIS171 |
| C | ASP211 |
| C | ASP213 |
| C | ASP262 |
| C | ASP264 |
| C | THR276 |
| C | GLU307 |
| C | MN401 |
| C | MN402 |
| C | HOH509 |
| C | HOH511 |
| C | HOH525 |
| C | HOH538 |
| site_id | DC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL C 408 |
| Chain | Residue |
| C | ASP79 |
| C | PRO80 |
| C | GLN81 |
| C | LYS86 |
| C | TRP87 |
| site_id | DC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL C 409 |
| Chain | Residue |
| C | ASN32 |
| C | ILE38 |
| C | TYR41 |
| C | GLU73 |
| C | HOH563 |
| site_id | DC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN D 401 |
| Chain | Residue |
| D | HIS131 |
| D | ASP154 |
| D | ASP158 |
| D | ASP262 |
| D | MN402 |
| D | XA2404 |
| site_id | DC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN D 402 |
| Chain | Residue |
| D | ASP154 |
| D | HIS156 |
| D | ASP262 |
| D | ASP264 |
| D | MN401 |
| D | XA2404 |
| site_id | DC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CS D 403 |
| Chain | Residue |
| D | TYR227 |
| D | ASP232 |
| site_id | DC7 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE XA2 D 404 |
| Chain | Residue |
| D | HIS131 |
| D | ASP154 |
| D | HIS156 |
| D | ASP158 |
| D | ASN160 |
| D | SER167 |
| D | HIS171 |
| D | GLY172 |
| D | ASP211 |
| D | ASP213 |
| D | ASP262 |
| D | ASP264 |
| D | GLU307 |
| D | MN401 |
| D | MN402 |
| D | HOH505 |
Functional Information from PROSITE/UniProt
| site_id | PS01053 |
| Number of Residues | 22 |
| Details | ARGINASE_1 Arginase family signature. SFDIDaldPlvaPStgtavpgG |
| Chain | Residue | Details |
| A | SER260-GLY281 | |
| C | SER260-GLY281 |
