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4Q3E

PylD cocrystallized with L-Ornithine-Nd-D-lysine and NAD+

Functional Information from GO Data
ChainGOidnamespacecontents
A0008652biological_processamino acid biosynthetic process
A0016491molecular_functionoxidoreductase activity
B0008652biological_processamino acid biosynthetic process
B0016491molecular_functionoxidoreductase activity
Functional Information from PDB Data
site_idAC1
Number of Residues34
DetailsBINDING SITE FOR RESIDUE NAD A 901
ChainResidue
AASN121
AASP173
ALEU176
AALA203
ATHR204
APRO205
ACYS206
ATHR209
APRO224
AILE226
AGLU245
ATHR125
APRO246
ALEU247
AMG903
A2YJ904
ASO4907
AHOH1001
AHOH1002
AHOH1011
AHOH1013
AHOH1018
AVAL147
AHOH1025
AHOH1029
AHOH1063
AHOH1091
AHOH1105
AGLY150
ALYS151
AVAL152
ATYR170
AASP171
AALA172

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA A 902
ChainResidue
AGLU202
ATHR204
ACYS206
APRO227

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 903
ChainResidue
ATYR129
AGLU245
ALEU247
AILE249
AGLY250
ANAD901

site_idAC4
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 2YJ A 904
ChainResidue
AVAL53
AILE60
APHE63
AALA103
AASP104
AASP105
AILE226
ANAD901
ASO4907
AHOH1003
AHOH1022
AHOH1031
AHOH1032
AHOH1043

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 905
ChainResidue
ALEU242
AALA244

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 906
ChainResidue
AILE226
APRO246

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 907
ChainResidue
ANAD901
A2YJ904
AHOH1018
AHOH1088
AHOH1105

site_idAC8
Number of Residues31
DetailsBINDING SITE FOR RESIDUE NAD B 901
ChainResidue
BASN121
BTHR125
BVAL147
BGLY150
BLYS151
BVAL152
BTYR170
BASP171
BALA172
BASP173
BLEU176
BALA203
BTHR204
BPRO205
BCYS206
BTHR209
BPRO224
BILE226
BGLU245
BPRO246
BLEU247
BMG903
B2YJ904
BEDO906
BHOH1002
BHOH1003
BHOH1010
BHOH1033
BHOH1047
BHOH1051
BHOH1082

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 902
ChainResidue
BTHR204
BCYS206
BPRO227
BHOH1005
BGLU202

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 903
ChainResidue
BTYR129
BGLU245
BLEU247
BILE249
BGLY250
BNAD901

site_idBC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE 2YJ B 904
ChainResidue
BPRO52
BVAL53
BILE60
BPHE63
BALA103
BASP104
BASP105
BNAD901
BEDO906
BHOH1001
BHOH1012
BHOH1020
BHOH1036

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 905
ChainResidue
AASP85
AMET102
BASP85
BTYR89
BMET102

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 906
ChainResidue
BNAD901
B2YJ904

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:24916332, ECO:0007744|PDB:4Q39
ChainResidueDetails
ALEU4
AVAL53
AILE60
AALA103
BLEU4
BVAL53
BILE60
BALA103

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:23720358, ECO:0000269|PubMed:24916332, ECO:0007744|PDB:4JK3, ECO:0007744|PDB:4Q3D
ChainResidueDetails
ALYS151
BASP171
BCYS206
BPRO224
BILE226
BGLU245
AVAL152
AASP171
ACYS206
APRO224
AILE226
AGLU245
BLYS151
BVAL152

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PDB entries from 2024-07-17

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