4Q3E
PylD cocrystallized with L-Ornithine-Nd-D-lysine and NAD+
Functional Information from GO Data
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 34 |
| Details | BINDING SITE FOR RESIDUE NAD A 901 |
| Chain | Residue |
| A | ASN121 |
| A | ASP173 |
| A | LEU176 |
| A | ALA203 |
| A | THR204 |
| A | PRO205 |
| A | CYS206 |
| A | THR209 |
| A | PRO224 |
| A | ILE226 |
| A | GLU245 |
| A | THR125 |
| A | PRO246 |
| A | LEU247 |
| A | MG903 |
| A | 2YJ904 |
| A | SO4907 |
| A | HOH1001 |
| A | HOH1002 |
| A | HOH1011 |
| A | HOH1013 |
| A | HOH1018 |
| A | VAL147 |
| A | HOH1025 |
| A | HOH1029 |
| A | HOH1063 |
| A | HOH1091 |
| A | HOH1105 |
| A | GLY150 |
| A | LYS151 |
| A | VAL152 |
| A | TYR170 |
| A | ASP171 |
| A | ALA172 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA A 902 |
| Chain | Residue |
| A | GLU202 |
| A | THR204 |
| A | CYS206 |
| A | PRO227 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 903 |
| Chain | Residue |
| A | TYR129 |
| A | GLU245 |
| A | LEU247 |
| A | ILE249 |
| A | GLY250 |
| A | NAD901 |
| site_id | AC4 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE 2YJ A 904 |
| Chain | Residue |
| A | VAL53 |
| A | ILE60 |
| A | PHE63 |
| A | ALA103 |
| A | ASP104 |
| A | ASP105 |
| A | ILE226 |
| A | NAD901 |
| A | SO4907 |
| A | HOH1003 |
| A | HOH1022 |
| A | HOH1031 |
| A | HOH1032 |
| A | HOH1043 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO A 905 |
| Chain | Residue |
| A | LEU242 |
| A | ALA244 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO A 906 |
| Chain | Residue |
| A | ILE226 |
| A | PRO246 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 907 |
| Chain | Residue |
| A | NAD901 |
| A | 2YJ904 |
| A | HOH1018 |
| A | HOH1088 |
| A | HOH1105 |
| site_id | AC8 |
| Number of Residues | 31 |
| Details | BINDING SITE FOR RESIDUE NAD B 901 |
| Chain | Residue |
| B | ASN121 |
| B | THR125 |
| B | VAL147 |
| B | GLY150 |
| B | LYS151 |
| B | VAL152 |
| B | TYR170 |
| B | ASP171 |
| B | ALA172 |
| B | ASP173 |
| B | LEU176 |
| B | ALA203 |
| B | THR204 |
| B | PRO205 |
| B | CYS206 |
| B | THR209 |
| B | PRO224 |
| B | ILE226 |
| B | GLU245 |
| B | PRO246 |
| B | LEU247 |
| B | MG903 |
| B | 2YJ904 |
| B | EDO906 |
| B | HOH1002 |
| B | HOH1003 |
| B | HOH1010 |
| B | HOH1033 |
| B | HOH1047 |
| B | HOH1051 |
| B | HOH1082 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA B 902 |
| Chain | Residue |
| B | THR204 |
| B | CYS206 |
| B | PRO227 |
| B | HOH1005 |
| B | GLU202 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 903 |
| Chain | Residue |
| B | TYR129 |
| B | GLU245 |
| B | LEU247 |
| B | ILE249 |
| B | GLY250 |
| B | NAD901 |
| site_id | BC2 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE 2YJ B 904 |
| Chain | Residue |
| B | PRO52 |
| B | VAL53 |
| B | ILE60 |
| B | PHE63 |
| B | ALA103 |
| B | ASP104 |
| B | ASP105 |
| B | NAD901 |
| B | EDO906 |
| B | HOH1001 |
| B | HOH1012 |
| B | HOH1020 |
| B | HOH1036 |
| site_id | BC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL B 905 |
| Chain | Residue |
| A | ASP85 |
| A | MET102 |
| B | ASP85 |
| B | TYR89 |
| B | MET102 |
| site_id | BC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO B 906 |
| Chain | Residue |
| B | NAD901 |
| B | 2YJ904 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 7 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"24916332","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4Q39","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 14 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"23720358","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24916332","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4JK3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4Q3D","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
