4PRU
Crystal structure of dimethyllysine hen egg-white lysozyme in complex with sclx4 at 2.2 A resolution
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003796 | molecular_function | lysozyme activity |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005576 | cellular_component | extracellular region |
| A | 0005615 | cellular_component | extracellular space |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005783 | cellular_component | endoplasmic reticulum |
| A | 0005794 | cellular_component | Golgi apparatus |
| A | 0016231 | molecular_function | beta-N-acetylglucosaminidase activity |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| A | 0016998 | biological_process | cell wall macromolecule catabolic process |
| A | 0031640 | biological_process | killing of cells of another organism |
| A | 0042742 | biological_process | defense response to bacterium |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0050829 | biological_process | defense response to Gram-negative bacterium |
| A | 0050830 | biological_process | defense response to Gram-positive bacterium |
| A | 0051672 | biological_process | obsolete catabolism by organism of cell wall peptidoglycan in other organism |
| B | 0003796 | molecular_function | lysozyme activity |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005576 | cellular_component | extracellular region |
| B | 0005615 | cellular_component | extracellular space |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005783 | cellular_component | endoplasmic reticulum |
| B | 0005794 | cellular_component | Golgi apparatus |
| B | 0016231 | molecular_function | beta-N-acetylglucosaminidase activity |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| B | 0016998 | biological_process | cell wall macromolecule catabolic process |
| B | 0031640 | biological_process | killing of cells of another organism |
| B | 0042742 | biological_process | defense response to bacterium |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0050829 | biological_process | defense response to Gram-negative bacterium |
| B | 0050830 | biological_process | defense response to Gram-positive bacterium |
| B | 0051672 | biological_process | obsolete catabolism by organism of cell wall peptidoglycan in other organism |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE T3Y A 201 |
| Chain | Residue |
| A | TYR23 |
| A | HOH347 |
| B | ARG5 |
| B | MLY33 |
| B | PHE38 |
| B | PRO70 |
| B | GLY71 |
| B | TRP123 |
| A | ASN106 |
| A | TRP111 |
| A | ARG112 |
| A | MLY116 |
| A | GLY117 |
| A | GOL203 |
| A | HOH310 |
| A | HOH327 |
| site_id | AC2 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE T3Y A 202 |
| Chain | Residue |
| A | DM01 |
| A | PHE3 |
| A | GLU7 |
| A | ALA10 |
| A | ALA11 |
| A | ARG14 |
| A | HIS15 |
| A | ARG128 |
| A | HOH306 |
| A | HOH340 |
| A | HOH346 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL A 203 |
| Chain | Residue |
| A | ASN27 |
| A | CYS115 |
| A | GLY117 |
| A | THR118 |
| A | VAL120 |
| A | T3Y201 |
| B | ARG114 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 204 |
| Chain | Residue |
| A | PHE34 |
| A | ARG114 |
| A | THR118 |
| A | ASP119 |
| A | TRP123 |
| B | T3Y201 |
| site_id | AC5 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE T3Y B 201 |
| Chain | Residue |
| A | ARG5 |
| A | MLY33 |
| A | GLY71 |
| A | SER72 |
| A | ARG73 |
| A | TRP123 |
| A | GOL204 |
| A | HOH312 |
| B | ASN106 |
| B | TRP111 |
| B | ARG112 |
| B | MLY116 |
| B | GLY117 |
| B | HOH303 |
| B | HOH304 |
| B | HOH321 |
| B | HOH327 |
| B | HOH333 |
| B | HOH337 |
| site_id | AC6 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE T3Y B 202 |
| Chain | Residue |
| B | DM01 |
| B | PHE3 |
| B | GLU7 |
| B | ALA10 |
| B | ALA11 |
| B | ARG14 |
| B | HIS15 |
| B | HOH311 |
| B | HOH316 |
| B | HOH346 |
| B | HOH347 |
Functional Information from PROSITE/UniProt
| site_id | PS00128 |
| Number of Residues | 19 |
| Details | GLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC |
| Chain | Residue | Details |
| A | CYS76-CYS94 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Active site: {} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Binding site: {} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | MCSA1 |
| Number of Residues | 6 |
| Details | M-CSA 203 |
| Chain | Residue | Details |
| A | THR47 | hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
| A | ILE58 | |
| A | SER60 | |
| A | TRP62 | |
| A | CYS64 | covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction |
| A | GLY71 |
| site_id | MCSA2 |
| Number of Residues | 6 |
| Details | M-CSA 203 |
| Chain | Residue | Details |
| B | THR47 | hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
| B | ILE58 | |
| B | SER60 | |
| B | TRP62 | |
| B | CYS64 | covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction |
| B | GLY71 |
