4PHH

Crystal structure of Ypt7 covalently modified with GNP

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003924	molecular_function	GTPase activity
A	0005525	molecular_function	GTP binding
B	0003924	molecular_function	GTPase activity
B	0005525	molecular_function	GTP binding
C	0003924	molecular_function	GTPase activity
C	0005525	molecular_function	GTP binding
D	0003924	molecular_function	GTPase activity
D	0005525	molecular_function	GTP binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	24
Details	binding site for residue 2UK A 201

Chain	Residue
A	ASP16
A	SER34
A	CYS35
A	TYR37
A	THR40
A	GLY67
A	ASN126
A	LYS127
A	ASP129
A	SER158
A	ALA159
A	SER17
A	LYS160
A	MG202
A	HOH303
A	HOH304
A	HOH310
A	GLY18
A	VAL19
A	GLY20
A	LYS21
A	THR22
A	SER23
A	TYR33

---

site_id	AC2
Number of Residues	5
Details	binding site for residue MG A 202

Chain	Residue
A	THR22
A	THR40
A	2UK201
A	HOH303
A	HOH304

---

site_id	AC3
Number of Residues	1
Details	binding site for residue CL A 203

Chain	Residue
A	LYS101

---

site_id	AC4
Number of Residues	6
Details	binding site for residue MG B 202

Chain	Residue
B	THR22
B	THR40
B	ASP64
B	2UK201
B	HOH301
B	HOH302

---

site_id	AC5
Number of Residues	4
Details	binding site for residue CL B 203

Chain	Residue
B	ALA162
B	VAL165
B	ASP166
D	LYS101

---

site_id	AC6
Number of Residues	5
Details	binding site for residue MG C 202

Chain	Residue
C	THR22
C	THR40
C	2UK201
C	HOH302
C	HOH303

---

site_id	AC7
Number of Residues	5
Details	binding site for residue MG D 202

Chain	Residue
D	THR22
D	THR40
D	2UK201
D	HOH301
D	HOH302

---

site_id	AC8
Number of Residues	4
Details	binding site for residue CL D 203

Chain	Residue
B	LYS101
D	ALA162
D	VAL165
D	ASP166

---

site_id	AC9
Number of Residues	20
Details	binding site for Di-peptide 2UK B 201 and CYS B 35

Chain	Residue
B	SER17
B	GLY18
B	VAL19
B	GLY20
B	LYS21
B	THR22
B	SER23
B	TYR33
B	SER34
B	THR40
B	GLY67
B	ASN126
B	LYS127
B	ASP129
B	SER158
B	ALA159
B	LYS160
B	MG202
B	HOH301
B	HOH302

---

site_id	AD1
Number of Residues	22
Details	binding site for Di-peptide 2UK C 201 and CYS C 35

Chain	Residue
C	SER17
C	GLY18
C	VAL19
C	GLY20
C	LYS21
C	THR22
C	SER23
C	TYR33
C	SER34
C	GLN36
C	TYR37
C	THR40
C	GLY67
C	ASN126
C	LYS127
C	ASP129
C	SER158
C	ALA159
C	LYS160
C	MG202
C	HOH302
C	HOH303

---

site_id	AD2
Number of Residues	24
Details	binding site for Di-peptide 2UK D 201 and CYS D 35

Chain	Residue
D	GLY18
D	VAL19
D	GLY20
D	LYS21
D	THR22
D	SER23
D	TYR33
D	SER34
D	LYS38
D	ALA39
D	THR40
D	GLY67
D	ASN126
D	LYS127
D	ASP129
D	SER158
D	ALA159
D	LYS160
D	MG202
D	HOH301
D	HOH302
C	GLU69
C	ARG70
D	SER17

---

Functional Information from PROSITE/UniProt

site_id	PS00675
Number of Residues	14
Details	SIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. VIIlGDSGVGKtsL

Chain	Residue	Details
A	VAL11-LEU24

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	16
Details	Motif: {"description":"Effector region","evidences":[{"evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	58
Details	Binding site: {"evidences":[{"source":"PDB","id":"1KY2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1KY3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PHF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PHG","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PDB","id":"1KY2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PHG","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	8
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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