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4PBP

crystal structure of zebrafish short-chain pentraxin protein

Functional Information from GO Data
ChainGOidnamespacecontents
A0003674molecular_functionmolecular_function
A0005576cellular_componentextracellular region
A0006953biological_processacute-phase response
A0008150biological_processbiological_process
A0015485molecular_functioncholesterol binding
A0046872molecular_functionmetal ion binding
A0051607biological_processdefense response to virus
B0003674molecular_functionmolecular_function
B0005576cellular_componentextracellular region
B0006953biological_processacute-phase response
B0008150biological_processbiological_process
B0015485molecular_functioncholesterol binding
B0046872molecular_functionmetal ion binding
B0051607biological_processdefense response to virus
C0003674molecular_functionmolecular_function
C0005576cellular_componentextracellular region
C0006953biological_processacute-phase response
C0008150biological_processbiological_process
C0015485molecular_functioncholesterol binding
C0046872molecular_functionmetal ion binding
C0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CA A 301
ChainResidue
AASP139
AASP141
AGLN151
AHOH482
AHOH489
AHOH504

site_idAC2
Number of Residues6
Detailsbinding site for residue CA A 302
ChainResidue
AASP141
AHOH484
AHOH485
AASP60
AASP139
APRO140

site_idAC3
Number of Residues10
Detailsbinding site for residue GOL A 303
ChainResidue
ASER29
ALEU30
ASER31
AALA32
AASP164
AHOH404
AHOH417
AHOH422
BVAL203
BPRO205

site_idAC4
Number of Residues12
Detailsbinding site for residue GOL A 304
ChainResidue
AGLU48
AASP60
ATRP65
AGLU67
ATYR75
ASER79
AHOH424
AHOH435
AHOH438
AHOH485
AHOH497
BMET-2

site_idAC5
Number of Residues6
Detailsbinding site for residue CA B 301
ChainResidue
BASP139
BASP141
BGLN151
BHOH478
BHOH492
BHOH494

site_idAC6
Number of Residues6
Detailsbinding site for residue CA B 302
ChainResidue
BASP60
BASP139
BPRO140
BASP141
BHOH483
BHOH486

site_idAC7
Number of Residues7
Detailsbinding site for residue GOL B 303
ChainResidue
BGLU48
BTRP65
BGLU67
BTYR75
BSER79
BHOH479
BHOH483

site_idAC8
Number of Residues6
Detailsbinding site for residue CA C 301
ChainResidue
CASP139
CASP141
CGLN151
CHOH435
CHOH438
CHOH439

site_idAC9
Number of Residues6
Detailsbinding site for residue CA C 302
ChainResidue
CASP60
CASP139
CPRO140
CASP141
CHOH433
CHOH443

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues606
DetailsDomain: {"description":"Pentraxin (PTX)","evidences":[{"source":"PROSITE-ProRule","id":"PRU01172","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues15
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"25592778","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4PBP","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

244693

PDB entries from 2025-11-12

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