4P69
Acek (D477A) ICDH complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004674 | molecular_function | protein serine/threonine kinase activity |
A | 0004721 | molecular_function | phosphoprotein phosphatase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0006006 | biological_process | glucose metabolic process |
A | 0006097 | biological_process | glyoxylate cycle |
A | 0006099 | biological_process | tricarboxylic acid cycle |
A | 0008772 | molecular_function | [isocitrate dehydrogenase (NADP+)] kinase activity |
A | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
A | 0016791 | molecular_function | phosphatase activity |
B | 0004674 | molecular_function | protein serine/threonine kinase activity |
B | 0004721 | molecular_function | phosphoprotein phosphatase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0006006 | biological_process | glucose metabolic process |
B | 0006097 | biological_process | glyoxylate cycle |
B | 0006099 | biological_process | tricarboxylic acid cycle |
B | 0008772 | molecular_function | [isocitrate dehydrogenase (NADP+)] kinase activity |
B | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
B | 0016791 | molecular_function | phosphatase activity |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0004450 | molecular_function | isocitrate dehydrogenase (NADP+) activity |
C | 0005515 | molecular_function | protein binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006097 | biological_process | glyoxylate cycle |
C | 0006099 | biological_process | tricarboxylic acid cycle |
C | 0006979 | biological_process | response to oxidative stress |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
C | 0022900 | biological_process | electron transport chain |
C | 0046872 | molecular_function | metal ion binding |
C | 0051287 | molecular_function | NAD binding |
C | 0097216 | molecular_function | guanosine tetraphosphate binding |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0004450 | molecular_function | isocitrate dehydrogenase (NADP+) activity |
D | 0005515 | molecular_function | protein binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0006097 | biological_process | glyoxylate cycle |
D | 0006099 | biological_process | tricarboxylic acid cycle |
D | 0006979 | biological_process | response to oxidative stress |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
D | 0022900 | biological_process | electron transport chain |
D | 0046872 | molecular_function | metal ion binding |
D | 0051287 | molecular_function | NAD binding |
D | 0097216 | molecular_function | guanosine tetraphosphate binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 10 |
Details | binding site for residue AMP A 601 |
Chain | Residue |
A | SER101 |
A | GLU376 |
A | ASN104 |
A | SER105 |
A | HIS113 |
A | LEU116 |
A | LYS291 |
A | LYS294 |
A | THR295 |
A | TYR298 |
site_id | AC2 |
Number of Residues | 17 |
Details | binding site for residue ADP A 602 |
Chain | Residue |
A | PRO316 |
A | GLY317 |
A | ILE318 |
A | GLY320 |
A | VAL322 |
A | MET323 |
A | VAL325 |
A | LYS336 |
A | GLU416 |
A | ARG417 |
A | ARG418 |
A | MET419 |
A | LYS461 |
A | ASN462 |
A | TYR474 |
A | ASP475 |
A | ALA477 |
site_id | AC3 |
Number of Residues | 15 |
Details | binding site for residue ADP B 601 |
Chain | Residue |
B | ILE318 |
B | GLY320 |
B | MET321 |
B | VAL322 |
B | MET323 |
B | VAL325 |
B | VAL334 |
B | LYS336 |
B | GLU416 |
B | ARG417 |
B | MET419 |
B | ASP457 |
B | LYS461 |
B | ASN462 |
B | ASP475 |
site_id | AC4 |
Number of Residues | 8 |
Details | binding site for residue AMP B 602 |
Chain | Residue |
B | ASN104 |
B | SER105 |
B | HIS113 |
B | LYS291 |
B | LYS294 |
B | THR295 |
B | TYR298 |
B | GLU376 |
site_id | AC5 |
Number of Residues | 9 |
Details | binding site for Ligand GLU C 87 bound to SER C 3 |
Chain | Residue |
C | SER3 |
C | VAL5 |
C | TYR78 |
C | PRO85 |
C | ALA86 |
C | THR88 |
C | LEU89 |
C | ASP90 |
C | LEU91 |
site_id | AC6 |
Number of Residues | 9 |
Details | binding site for Ligand GLU C 87 bound to SER C 3 |
Chain | Residue |
C | SER3 |
C | VAL5 |
C | TYR78 |
C | PRO85 |
C | ALA86 |
C | THR88 |
C | LEU89 |
C | ASP90 |
C | LEU91 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for Ligand THR C 271 bound to ASN C 268 |
Chain | Residue |
C | ASP221 |
C | ASN268 |
C | PRO269 |
C | ASN270 |
C | GLY272 |
C | LYS273 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for Ligand ASP C 392 bound to ASN C 352 |
Chain | Residue |
C | ASN352 |
C | THR390 |
C | TYR391 |
C | PHE393 |
C | GLU394 |
C | LEU396 |
site_id | AC9 |
Number of Residues | 11 |
Details | binding site for Di-peptide TYR C 57 and ARG C 61 |
Chain | Residue |
C | GLU25 |
C | VAL53 |
C | GLU54 |
C | LYS55 |
C | ALA56 |
C | LYS58 |
C | GLY59 |
C | GLU60 |
C | LYS62 |
C | TRP369 |
C | ALA372 |
site_id | AD1 |
Number of Residues | 16 |
Details | binding site for Di-peptide PHE C 178 and PHE D 178 |
Chain | Residue |
D | LYS174 |
D | VAL175 |
D | ILE176 |
D | LYS177 |
D | LEU179 |
D | ARG180 |
D | GLU182 |
D | MET183 |
C | LYS174 |
C | VAL175 |
C | ILE176 |
C | LYS177 |
C | LEU179 |
C | ARG180 |
C | GLU182 |
C | MET183 |
site_id | AD2 |
Number of Residues | 16 |
Details | binding site for Di-peptide PHE C 178 and PHE D 178 |
Chain | Residue |
C | LYS174 |
C | VAL175 |
C | ILE176 |
C | LYS177 |
C | LEU179 |
C | ARG180 |
C | GLU182 |
C | MET183 |
D | LYS174 |
D | VAL175 |
D | ILE176 |
D | LYS177 |
D | LEU179 |
D | ARG180 |
D | GLU182 |
D | MET183 |
site_id | AD3 |
Number of Residues | 16 |
Details | binding site for Di-peptide PHE C 178 and PHE D 178 |
Chain | Residue |
C | LYS174 |
C | VAL175 |
C | ILE176 |
C | LYS177 |
C | LEU179 |
C | ARG180 |
C | GLU182 |
C | MET183 |
D | LYS174 |
D | VAL175 |
D | ILE176 |
D | LYS177 |
D | LEU179 |
D | ARG180 |
D | GLU182 |
D | MET183 |
site_id | AD4 |
Number of Residues | 16 |
Details | binding site for Di-peptide PHE C 178 and PHE D 178 |
Chain | Residue |
C | LYS174 |
C | VAL175 |
C | ILE176 |
C | LYS177 |
C | LEU179 |
C | ARG180 |
C | GLU182 |
C | MET183 |
D | LYS174 |
D | VAL175 |
D | ILE176 |
D | LYS177 |
D | LEU179 |
D | ARG180 |
D | GLU182 |
D | MET183 |
site_id | AD5 |
Number of Residues | 16 |
Details | binding site for Di-peptide PHE C 178 and PHE D 178 |
Chain | Residue |
C | LYS174 |
C | VAL175 |
C | ILE176 |
C | LYS177 |
C | LEU179 |
C | ARG180 |
C | GLU182 |
C | MET183 |
D | LYS174 |
D | VAL175 |
D | ILE176 |
D | LYS177 |
D | LEU179 |
D | ARG180 |
D | GLU182 |
D | MET183 |
site_id | AD6 |
Number of Residues | 16 |
Details | binding site for Di-peptide PHE C 178 and PHE D 178 |
Chain | Residue |
C | LYS174 |
C | VAL175 |
C | ILE176 |
C | LYS177 |
C | LEU179 |
C | ARG180 |
C | GLU182 |
C | MET183 |
D | LYS174 |
D | VAL175 |
D | ILE176 |
D | LYS177 |
D | LEU179 |
D | ARG180 |
D | GLU182 |
D | MET183 |
site_id | AD7 |
Number of Residues | 16 |
Details | binding site for Di-peptide PHE C 178 and PHE D 178 |
Chain | Residue |
C | LYS174 |
C | VAL175 |
C | ILE176 |
C | LYS177 |
C | LEU179 |
C | ARG180 |
C | GLU182 |
C | MET183 |
D | LYS174 |
D | VAL175 |
D | ILE176 |
D | LYS177 |
D | LEU179 |
D | ARG180 |
D | GLU182 |
D | MET183 |
site_id | AD8 |
Number of Residues | 16 |
Details | binding site for Di-peptide PHE C 178 and PHE D 178 |
Chain | Residue |
C | LYS174 |
C | VAL175 |
C | ILE176 |
C | LYS177 |
C | LEU179 |
C | ARG180 |
C | GLU182 |
C | MET183 |
D | LYS174 |
D | VAL175 |
D | ILE176 |
D | LYS177 |
D | LEU179 |
D | ARG180 |
D | GLU182 |
D | MET183 |
site_id | AD9 |
Number of Residues | 9 |
Details | binding site for Di-peptide ASP C 221 and LYS C 273 |
Chain | Residue |
C | ALA217 |
C | ILE218 |
C | ALA219 |
C | ASN220 |
C | ARG222 |
C | ASN268 |
C | THR271 |
C | GLY272 |
C | GLU274 |
site_id | AE1 |
Number of Residues | 9 |
Details | binding site for Di-peptide ASP C 221 and LYS C 273 |
Chain | Residue |
C | ALA217 |
C | ILE218 |
C | ALA219 |
C | ASN220 |
C | ARG222 |
C | ASN268 |
C | THR271 |
C | GLY272 |
C | GLU274 |
site_id | AE2 |
Number of Residues | 13 |
Details | binding site for Di-peptide GLU C 238 and MET C 302 |
Chain | Residue |
C | ASP158 |
C | LYS199 |
C | CYS201 |
C | THR237 |
C | GLY239 |
C | ALA240 |
C | PHE241 |
C | LYS242 |
C | CYS301 |
C | ASN303 |
C | LEU304 |
C | ASN305 |
C | GLY306 |
site_id | AE3 |
Number of Residues | 29 |
Details | binding site for Di-peptide ASP C 283 and ASP D 307 |
Chain | Residue |
C | ARG153 |
C | LYS230 |
C | ILE281 |
C | ALA282 |
C | ALA284 |
C | PHE285 |
C | LEU286 |
C | ASN303 |
C | LEU304 |
C | ASN305 |
C | GLY306 |
C | TYR308 |
C | ILE309 |
C | SER310 |
C | ASP311 |
D | ARG153 |
D | ILE281 |
D | ALA282 |
D | ALA284 |
D | PHE285 |
D | LEU286 |
D | ASN303 |
D | LEU304 |
D | ASN305 |
D | GLY306 |
D | TYR308 |
D | ILE309 |
D | SER310 |
D | ASP311 |
site_id | AE4 |
Number of Residues | 9 |
Details | binding site for Di-peptide LYS D 13 and GLU D 94 |
Chain | Residue |
D | LYS12 |
D | ILE14 |
D | THR15 |
D | ASP90 |
D | LEU91 |
D | ILE92 |
D | ARG93 |
D | TYR95 |
D | ARG96 |
site_id | AE5 |
Number of Residues | 12 |
Details | binding site for Di-peptide TYR D 57 and ARG D 61 |
Chain | Residue |
D | GLU25 |
D | VAL53 |
D | LYS55 |
D | ALA56 |
D | LYS58 |
D | GLY59 |
D | GLU60 |
D | LYS62 |
D | TRP369 |
D | THR370 |
D | GLU371 |
D | ALA372 |
site_id | AE6 |
Number of Residues | 12 |
Details | binding site for Di-peptide TYR D 78 and GLU D 87 |
Chain | Residue |
D | SER3 |
D | LYS4 |
D | SER74 |
D | VAL77 |
D | GLY79 |
D | VAL82 |
D | PRO85 |
D | ALA86 |
D | THR88 |
D | LEU89 |
D | ASP90 |
D | LEU91 |
site_id | AE7 |
Number of Residues | 12 |
Details | binding site for Di-peptide TYR D 125 and ARG D 208 |
Chain | Residue |
D | ASP123 |
D | LEU124 |
D | ILE126 |
D | GLU154 |
D | ASN155 |
D | GLU204 |
D | GLY205 |
D | THR206 |
D | LYS207 |
D | LEU209 |
D | ILE328 |
D | ASP330 |
site_id | AE8 |
Number of Residues | 12 |
Details | binding site for Di-peptide TYR D 125 and ARG D 208 |
Chain | Residue |
D | ASP123 |
D | LEU124 |
D | ILE126 |
D | GLU154 |
D | ASN155 |
D | GLU204 |
D | GLY205 |
D | THR206 |
D | LYS207 |
D | LEU209 |
D | ILE328 |
D | ASP330 |
site_id | AE9 |
Number of Residues | 12 |
Details | binding site for Di-peptide TYR D 125 and ARG D 208 |
Chain | Residue |
D | ASP123 |
D | LEU124 |
D | ILE126 |
D | GLU154 |
D | ASN155 |
D | GLU204 |
D | GLY205 |
D | THR206 |
D | LYS207 |
D | LEU209 |
D | ILE328 |
D | ASP330 |
site_id | AF1 |
Number of Residues | 12 |
Details | binding site for Di-peptide TYR D 125 and ARG D 208 |
Chain | Residue |
D | ASP123 |
D | LEU124 |
D | ILE126 |
D | GLU154 |
D | ASN155 |
D | GLU204 |
D | GLY205 |
D | THR206 |
D | LYS207 |
D | LEU209 |
D | ILE328 |
D | ASP330 |
site_id | AF2 |
Number of Residues | 12 |
Details | binding site for Di-peptide TYR D 125 and ARG D 208 |
Chain | Residue |
D | ASP123 |
D | LEU124 |
D | ILE126 |
D | GLU154 |
D | ASN155 |
D | GLU204 |
D | GLY205 |
D | THR206 |
D | LYS207 |
D | LEU209 |
D | ILE328 |
D | ASP330 |
site_id | AF3 |
Number of Residues | 12 |
Details | binding site for Di-peptide TYR D 125 and ARG D 208 |
Chain | Residue |
D | ASP123 |
D | LEU124 |
D | ILE126 |
D | GLU154 |
D | ASN155 |
D | GLU204 |
D | GLY205 |
D | THR206 |
D | LYS207 |
D | LEU209 |
D | ILE328 |
D | ASP330 |
site_id | AF4 |
Number of Residues | 12 |
Details | binding site for Di-peptide TYR D 125 and ARG D 208 |
Chain | Residue |
D | ASP123 |
D | LEU124 |
D | ILE126 |
D | GLU154 |
D | ASN155 |
D | GLU204 |
D | GLY205 |
D | THR206 |
D | LYS207 |
D | LEU209 |
D | ILE328 |
D | ASP330 |
site_id | AF5 |
Number of Residues | 12 |
Details | binding site for Di-peptide TYR D 125 and ARG D 208 |
Chain | Residue |
D | ASP123 |
D | LEU124 |
D | ILE126 |
D | GLU154 |
D | ASN155 |
D | GLU204 |
D | GLY205 |
D | THR206 |
D | LYS207 |
D | LEU209 |
D | ILE328 |
D | ASP330 |
site_id | AF6 |
Number of Residues | 9 |
Details | binding site for Di-peptide GLN D 287 and LEU D 291 |
Chain | Residue |
C | ASP311 |
D | ALA284 |
D | PHE285 |
D | LEU286 |
D | GLN288 |
D | ILE289 |
D | LEU290 |
D | ARG292 |
D | PRO293 |
site_id | AF7 |
Number of Residues | 12 |
Details | binding site for Di-peptide GLU D 361 and ARG D 365 |
Chain | Residue |
D | ASN220 |
D | ILE357 |
D | LEU358 |
D | SER359 |
D | ALA360 |
D | MET362 |
D | MET363 |
D | LEU364 |
D | HIS366 |
D | MET367 |
D | GLY368 |
D | ASP374 |
Functional Information from PROSITE/UniProt
site_id | PS00470 |
Number of Residues | 20 |
Details | IDH_IMDH Isocitrate and isopropylmalate dehydrogenases signature. NLNGDYiSDalAaqv.GGIGI |
Chain | Residue | Details |
C | ASN303-ILE322 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:11284679, ECO:0000269|PubMed:2682654, ECO:0000269|PubMed:7761851, ECO:0007744|PDB:1AI2, ECO:0007744|PDB:1HJ6, ECO:0007744|PDB:1IDE, ECO:0007744|PDB:4AJ3, ECO:0007744|PDB:4AJR |
Chain | Residue | Details |
C | THR104 | |
D | THR104 |
site_id | SWS_FT_FI2 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000269|PubMed:10623532, ECO:0000269|PubMed:2204109, ECO:0007744|PDB:1AI3, ECO:0007744|PDB:1CW1, ECO:0007744|PDB:1CW7, ECO:0007744|PDB:1GRP, ECO:0007744|PDB:1P8F, ECO:0007744|PDB:1PB1, ECO:0007744|PDB:4AJ3, ECO:0007744|PDB:4AJA, ECO:0007744|PDB:4AJB, ECO:0007744|PDB:4AJS, ECO:0007744|PDB:4BNP, ECO:0007744|PDB:5ICD, ECO:0007744|PDB:8ICD |
Chain | Residue | Details |
C | SER113 | |
C | ASN115 | |
C | ARG129 | |
C | ARG153 | |
D | SER113 | |
D | ASN115 | |
D | ARG129 | |
D | ARG153 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:10623532, ECO:0000269|PubMed:2204109, ECO:0007744|PDB:1AI3, ECO:0007744|PDB:1CW7, ECO:0007744|PDB:1GRP, ECO:0007744|PDB:1P8F, ECO:0007744|PDB:1PB1, ECO:0007744|PDB:4AJ3, ECO:0007744|PDB:4AJA, ECO:0007744|PDB:4AJB, ECO:0007744|PDB:4AJS, ECO:0007744|PDB:4BNP, ECO:0007744|PDB:5ICD, ECO:0007744|PDB:8ICD |
Chain | Residue | Details |
C | ARG119 | |
D | ARG119 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:11284679, ECO:0000269|PubMed:2204109, ECO:0000269|PubMed:7761851, ECO:0007744|PDB:1AI3, ECO:0007744|PDB:1BL5, ECO:0007744|PDB:1GRP, ECO:0007744|PDB:1HJ6, ECO:0007744|PDB:1IDC, ECO:0007744|PDB:1P8F, ECO:0007744|PDB:4AJB, ECO:0007744|PDB:4AJR, ECO:0007744|PDB:4AJS, ECO:0007744|PDB:4BNP, ECO:0007744|PDB:8ICD |
Chain | Residue | Details |
C | ASP307 | |
D | ASP307 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:11284679, ECO:0000269|PubMed:2682654, ECO:0000269|PubMed:7761851, ECO:0007744|PDB:1AI2, ECO:0007744|PDB:1BL5, ECO:0007744|PDB:1HJ6, ECO:0007744|PDB:1IDE, ECO:0007744|PDB:1ISO, ECO:0007744|PDB:4AJ3, ECO:0007744|PDB:4AJR, ECO:0007744|PDB:9ICD |
Chain | Residue | Details |
C | HIS339 | |
D | HIS339 |
site_id | SWS_FT_FI6 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000269|PubMed:11284679, ECO:0000269|PubMed:2682654, ECO:0000269|PubMed:7761851, ECO:0007744|PDB:1AI2, ECO:0007744|PDB:1BL5, ECO:0007744|PDB:1HJ6, ECO:0007744|PDB:1IDE, ECO:0007744|PDB:4AJ3, ECO:0007744|PDB:4AJR, ECO:0007744|PDB:9ICD |
Chain | Residue | Details |
C | ASN352 | |
C | TYR391 | |
D | ASN352 | |
D | TYR391 |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:11284679, ECO:0000269|PubMed:2682654, ECO:0000269|PubMed:7761851, ECO:0007744|PDB:1AI2, ECO:0007744|PDB:9ICD |
Chain | Residue | Details |
C | ARG395 | |
D | ARG395 |
site_id | SWS_FT_FI8 |
Number of Residues | 4 |
Details | SITE: Critical for catalysis => ECO:0000269|PubMed:7761851, ECO:0000269|PubMed:7819221 |
Chain | Residue | Details |
C | TYR160 | |
C | LYS230 | |
D | TYR160 | |
D | LYS230 |
site_id | SWS_FT_FI9 |
Number of Residues | 4 |
Details | MOD_RES: N6-succinyllysine => ECO:0000269|PubMed:21151122 |
Chain | Residue | Details |
C | LYS100 | |
C | LYS242 | |
D | LYS100 | |
D | LYS242 |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0000269|PubMed:2204109, ECO:0000269|PubMed:3112144 |
Chain | Residue | Details |
C | SER113 | |
D | SER113 |
site_id | SWS_FT_FI11 |
Number of Residues | 2 |
Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842 |
Chain | Residue | Details |
C | LYS142 | |
D | LYS142 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 4 |
Details | M-CSA 7 |
Chain | Residue | Details |
C | TYR160 | electrostatic stabiliser, hydrogen bond donor, proton acceptor, proton donor, proton relay |
C | LYS230 | electrostatic stabiliser, proton acceptor, proton donor, proton relay |
C | ASP283 | electrostatic stabiliser, proton acceptor, proton donor |
C | ASP307 | metal ligand |
site_id | MCSA2 |
Number of Residues | 4 |
Details | M-CSA 7 |
Chain | Residue | Details |
D | TYR160 | electrostatic stabiliser, hydrogen bond donor, proton acceptor, proton donor, proton relay |
D | LYS230 | electrostatic stabiliser, proton acceptor, proton donor, proton relay |
D | ASP283 | electrostatic stabiliser, proton acceptor, proton donor |
D | ASP307 | metal ligand |