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4P69

Acek (D477A) ICDH complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0004674molecular_functionprotein serine/threonine kinase activity
A0004721molecular_functionphosphoprotein phosphatase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006006biological_processglucose metabolic process
A0006097biological_processglyoxylate cycle
A0006099biological_processtricarboxylic acid cycle
A0008772molecular_function[isocitrate dehydrogenase (NADP+)] kinase activity
A0016788molecular_functionhydrolase activity, acting on ester bonds
A0016791molecular_functionphosphatase activity
B0004674molecular_functionprotein serine/threonine kinase activity
B0004721molecular_functionphosphoprotein phosphatase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006006biological_processglucose metabolic process
B0006097biological_processglyoxylate cycle
B0006099biological_processtricarboxylic acid cycle
B0008772molecular_function[isocitrate dehydrogenase (NADP+)] kinase activity
B0016788molecular_functionhydrolase activity, acting on ester bonds
B0016791molecular_functionphosphatase activity
C0000287molecular_functionmagnesium ion binding
C0004450molecular_functionisocitrate dehydrogenase (NADP+) activity
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006097biological_processglyoxylate cycle
C0006099biological_processtricarboxylic acid cycle
C0006979biological_processresponse to oxidative stress
C0016491molecular_functionoxidoreductase activity
C0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
C0022900biological_processelectron transport chain
C0046872molecular_functionmetal ion binding
C0051287molecular_functionNAD binding
C0097216molecular_functionguanosine tetraphosphate binding
D0000287molecular_functionmagnesium ion binding
D0004450molecular_functionisocitrate dehydrogenase (NADP+) activity
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0006097biological_processglyoxylate cycle
D0006099biological_processtricarboxylic acid cycle
D0006979biological_processresponse to oxidative stress
D0016491molecular_functionoxidoreductase activity
D0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
D0022900biological_processelectron transport chain
D0046872molecular_functionmetal ion binding
D0051287molecular_functionNAD binding
D0097216molecular_functionguanosine tetraphosphate binding
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue AMP A 601
ChainResidue
ASER101
AGLU376
AASN104
ASER105
AHIS113
ALEU116
ALYS291
ALYS294
ATHR295
ATYR298

site_idAC2
Number of Residues17
Detailsbinding site for residue ADP A 602
ChainResidue
APRO316
AGLY317
AILE318
AGLY320
AVAL322
AMET323
AVAL325
ALYS336
AGLU416
AARG417
AARG418
AMET419
ALYS461
AASN462
ATYR474
AASP475
AALA477

site_idAC3
Number of Residues15
Detailsbinding site for residue ADP B 601
ChainResidue
BILE318
BGLY320
BMET321
BVAL322
BMET323
BVAL325
BVAL334
BLYS336
BGLU416
BARG417
BMET419
BASP457
BLYS461
BASN462
BASP475

site_idAC4
Number of Residues8
Detailsbinding site for residue AMP B 602
ChainResidue
BASN104
BSER105
BHIS113
BLYS291
BLYS294
BTHR295
BTYR298
BGLU376

site_idAC5
Number of Residues9
Detailsbinding site for Ligand GLU C 87 bound to SER C 3
ChainResidue
CSER3
CVAL5
CTYR78
CPRO85
CALA86
CTHR88
CLEU89
CASP90
CLEU91

site_idAC6
Number of Residues9
Detailsbinding site for Ligand GLU C 87 bound to SER C 3
ChainResidue
CSER3
CVAL5
CTYR78
CPRO85
CALA86
CTHR88
CLEU89
CASP90
CLEU91

site_idAC7
Number of Residues6
Detailsbinding site for Ligand THR C 271 bound to ASN C 268
ChainResidue
CASP221
CASN268
CPRO269
CASN270
CGLY272
CLYS273

site_idAC8
Number of Residues6
Detailsbinding site for Ligand ASP C 392 bound to ASN C 352
ChainResidue
CASN352
CTHR390
CTYR391
CPHE393
CGLU394
CLEU396

site_idAC9
Number of Residues11
Detailsbinding site for Di-peptide TYR C 57 and ARG C 61
ChainResidue
CGLU25
CVAL53
CGLU54
CLYS55
CALA56
CLYS58
CGLY59
CGLU60
CLYS62
CTRP369
CALA372

site_idAD1
Number of Residues16
Detailsbinding site for Di-peptide PHE C 178 and PHE D 178
ChainResidue
DLYS174
DVAL175
DILE176
DLYS177
DLEU179
DARG180
DGLU182
DMET183
CLYS174
CVAL175
CILE176
CLYS177
CLEU179
CARG180
CGLU182
CMET183

site_idAD2
Number of Residues16
Detailsbinding site for Di-peptide PHE C 178 and PHE D 178
ChainResidue
CLYS174
CVAL175
CILE176
CLYS177
CLEU179
CARG180
CGLU182
CMET183
DLYS174
DVAL175
DILE176
DLYS177
DLEU179
DARG180
DGLU182
DMET183

site_idAD3
Number of Residues16
Detailsbinding site for Di-peptide PHE C 178 and PHE D 178
ChainResidue
CLYS174
CVAL175
CILE176
CLYS177
CLEU179
CARG180
CGLU182
CMET183
DLYS174
DVAL175
DILE176
DLYS177
DLEU179
DARG180
DGLU182
DMET183

site_idAD4
Number of Residues16
Detailsbinding site for Di-peptide PHE C 178 and PHE D 178
ChainResidue
CLYS174
CVAL175
CILE176
CLYS177
CLEU179
CARG180
CGLU182
CMET183
DLYS174
DVAL175
DILE176
DLYS177
DLEU179
DARG180
DGLU182
DMET183

site_idAD5
Number of Residues16
Detailsbinding site for Di-peptide PHE C 178 and PHE D 178
ChainResidue
CLYS174
CVAL175
CILE176
CLYS177
CLEU179
CARG180
CGLU182
CMET183
DLYS174
DVAL175
DILE176
DLYS177
DLEU179
DARG180
DGLU182
DMET183

site_idAD6
Number of Residues16
Detailsbinding site for Di-peptide PHE C 178 and PHE D 178
ChainResidue
CLYS174
CVAL175
CILE176
CLYS177
CLEU179
CARG180
CGLU182
CMET183
DLYS174
DVAL175
DILE176
DLYS177
DLEU179
DARG180
DGLU182
DMET183

site_idAD7
Number of Residues16
Detailsbinding site for Di-peptide PHE C 178 and PHE D 178
ChainResidue
CLYS174
CVAL175
CILE176
CLYS177
CLEU179
CARG180
CGLU182
CMET183
DLYS174
DVAL175
DILE176
DLYS177
DLEU179
DARG180
DGLU182
DMET183

site_idAD8
Number of Residues16
Detailsbinding site for Di-peptide PHE C 178 and PHE D 178
ChainResidue
CLYS174
CVAL175
CILE176
CLYS177
CLEU179
CARG180
CGLU182
CMET183
DLYS174
DVAL175
DILE176
DLYS177
DLEU179
DARG180
DGLU182
DMET183

site_idAD9
Number of Residues9
Detailsbinding site for Di-peptide ASP C 221 and LYS C 273
ChainResidue
CALA217
CILE218
CALA219
CASN220
CARG222
CASN268
CTHR271
CGLY272
CGLU274

site_idAE1
Number of Residues9
Detailsbinding site for Di-peptide ASP C 221 and LYS C 273
ChainResidue
CALA217
CILE218
CALA219
CASN220
CARG222
CASN268
CTHR271
CGLY272
CGLU274

site_idAE2
Number of Residues13
Detailsbinding site for Di-peptide GLU C 238 and MET C 302
ChainResidue
CASP158
CLYS199
CCYS201
CTHR237
CGLY239
CALA240
CPHE241
CLYS242
CCYS301
CASN303
CLEU304
CASN305
CGLY306

site_idAE3
Number of Residues29
Detailsbinding site for Di-peptide ASP C 283 and ASP D 307
ChainResidue
CARG153
CLYS230
CILE281
CALA282
CALA284
CPHE285
CLEU286
CASN303
CLEU304
CASN305
CGLY306
CTYR308
CILE309
CSER310
CASP311
DARG153
DILE281
DALA282
DALA284
DPHE285
DLEU286
DASN303
DLEU304
DASN305
DGLY306
DTYR308
DILE309
DSER310
DASP311

site_idAE4
Number of Residues9
Detailsbinding site for Di-peptide LYS D 13 and GLU D 94
ChainResidue
DLYS12
DILE14
DTHR15
DASP90
DLEU91
DILE92
DARG93
DTYR95
DARG96

site_idAE5
Number of Residues12
Detailsbinding site for Di-peptide TYR D 57 and ARG D 61
ChainResidue
DGLU25
DVAL53
DLYS55
DALA56
DLYS58
DGLY59
DGLU60
DLYS62
DTRP369
DTHR370
DGLU371
DALA372

site_idAE6
Number of Residues12
Detailsbinding site for Di-peptide TYR D 78 and GLU D 87
ChainResidue
DSER3
DLYS4
DSER74
DVAL77
DGLY79
DVAL82
DPRO85
DALA86
DTHR88
DLEU89
DASP90
DLEU91

site_idAE7
Number of Residues12
Detailsbinding site for Di-peptide TYR D 125 and ARG D 208
ChainResidue
DASP123
DLEU124
DILE126
DGLU154
DASN155
DGLU204
DGLY205
DTHR206
DLYS207
DLEU209
DILE328
DASP330

site_idAE8
Number of Residues12
Detailsbinding site for Di-peptide TYR D 125 and ARG D 208
ChainResidue
DASP123
DLEU124
DILE126
DGLU154
DASN155
DGLU204
DGLY205
DTHR206
DLYS207
DLEU209
DILE328
DASP330

site_idAE9
Number of Residues12
Detailsbinding site for Di-peptide TYR D 125 and ARG D 208
ChainResidue
DASP123
DLEU124
DILE126
DGLU154
DASN155
DGLU204
DGLY205
DTHR206
DLYS207
DLEU209
DILE328
DASP330

site_idAF1
Number of Residues12
Detailsbinding site for Di-peptide TYR D 125 and ARG D 208
ChainResidue
DASP123
DLEU124
DILE126
DGLU154
DASN155
DGLU204
DGLY205
DTHR206
DLYS207
DLEU209
DILE328
DASP330

site_idAF2
Number of Residues12
Detailsbinding site for Di-peptide TYR D 125 and ARG D 208
ChainResidue
DASP123
DLEU124
DILE126
DGLU154
DASN155
DGLU204
DGLY205
DTHR206
DLYS207
DLEU209
DILE328
DASP330

site_idAF3
Number of Residues12
Detailsbinding site for Di-peptide TYR D 125 and ARG D 208
ChainResidue
DASP123
DLEU124
DILE126
DGLU154
DASN155
DGLU204
DGLY205
DTHR206
DLYS207
DLEU209
DILE328
DASP330

site_idAF4
Number of Residues12
Detailsbinding site for Di-peptide TYR D 125 and ARG D 208
ChainResidue
DASP123
DLEU124
DILE126
DGLU154
DASN155
DGLU204
DGLY205
DTHR206
DLYS207
DLEU209
DILE328
DASP330

site_idAF5
Number of Residues12
Detailsbinding site for Di-peptide TYR D 125 and ARG D 208
ChainResidue
DASP123
DLEU124
DILE126
DGLU154
DASN155
DGLU204
DGLY205
DTHR206
DLYS207
DLEU209
DILE328
DASP330

site_idAF6
Number of Residues9
Detailsbinding site for Di-peptide GLN D 287 and LEU D 291
ChainResidue
CASP311
DALA284
DPHE285
DLEU286
DGLN288
DILE289
DLEU290
DARG292
DPRO293

site_idAF7
Number of Residues12
Detailsbinding site for Di-peptide GLU D 361 and ARG D 365
ChainResidue
DASN220
DILE357
DLEU358
DSER359
DALA360
DMET362
DMET363
DLEU364
DHIS366
DMET367
DGLY368
DASP374

Functional Information from PROSITE/UniProt
site_idPS00470
Number of Residues20
DetailsIDH_IMDH Isocitrate and isopropylmalate dehydrogenases signature. NLNGDYiSDalAaqv.GGIGI
ChainResidueDetails
CASN303-ILE322

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:11284679, ECO:0000269|PubMed:2682654, ECO:0000269|PubMed:7761851, ECO:0007744|PDB:1AI2, ECO:0007744|PDB:1HJ6, ECO:0007744|PDB:1IDE, ECO:0007744|PDB:4AJ3, ECO:0007744|PDB:4AJR
ChainResidueDetails
CTHR104
DTHR104

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:10623532, ECO:0000269|PubMed:2204109, ECO:0007744|PDB:1AI3, ECO:0007744|PDB:1CW1, ECO:0007744|PDB:1CW7, ECO:0007744|PDB:1GRP, ECO:0007744|PDB:1P8F, ECO:0007744|PDB:1PB1, ECO:0007744|PDB:4AJ3, ECO:0007744|PDB:4AJA, ECO:0007744|PDB:4AJB, ECO:0007744|PDB:4AJS, ECO:0007744|PDB:4BNP, ECO:0007744|PDB:5ICD, ECO:0007744|PDB:8ICD
ChainResidueDetails
CSER113
CASN115
CARG129
CARG153
DSER113
DASN115
DARG129
DARG153

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:10623532, ECO:0000269|PubMed:2204109, ECO:0007744|PDB:1AI3, ECO:0007744|PDB:1CW7, ECO:0007744|PDB:1GRP, ECO:0007744|PDB:1P8F, ECO:0007744|PDB:1PB1, ECO:0007744|PDB:4AJ3, ECO:0007744|PDB:4AJA, ECO:0007744|PDB:4AJB, ECO:0007744|PDB:4AJS, ECO:0007744|PDB:4BNP, ECO:0007744|PDB:5ICD, ECO:0007744|PDB:8ICD
ChainResidueDetails
CARG119
DARG119

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:11284679, ECO:0000269|PubMed:2204109, ECO:0000269|PubMed:7761851, ECO:0007744|PDB:1AI3, ECO:0007744|PDB:1BL5, ECO:0007744|PDB:1GRP, ECO:0007744|PDB:1HJ6, ECO:0007744|PDB:1IDC, ECO:0007744|PDB:1P8F, ECO:0007744|PDB:4AJB, ECO:0007744|PDB:4AJR, ECO:0007744|PDB:4AJS, ECO:0007744|PDB:4BNP, ECO:0007744|PDB:8ICD
ChainResidueDetails
CASP307
DASP307

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:11284679, ECO:0000269|PubMed:2682654, ECO:0000269|PubMed:7761851, ECO:0007744|PDB:1AI2, ECO:0007744|PDB:1BL5, ECO:0007744|PDB:1HJ6, ECO:0007744|PDB:1IDE, ECO:0007744|PDB:1ISO, ECO:0007744|PDB:4AJ3, ECO:0007744|PDB:4AJR, ECO:0007744|PDB:9ICD
ChainResidueDetails
CHIS339
DHIS339

site_idSWS_FT_FI6
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:11284679, ECO:0000269|PubMed:2682654, ECO:0000269|PubMed:7761851, ECO:0007744|PDB:1AI2, ECO:0007744|PDB:1BL5, ECO:0007744|PDB:1HJ6, ECO:0007744|PDB:1IDE, ECO:0007744|PDB:4AJ3, ECO:0007744|PDB:4AJR, ECO:0007744|PDB:9ICD
ChainResidueDetails
CASN352
CTYR391
DASN352
DTYR391

site_idSWS_FT_FI7
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:11284679, ECO:0000269|PubMed:2682654, ECO:0000269|PubMed:7761851, ECO:0007744|PDB:1AI2, ECO:0007744|PDB:9ICD
ChainResidueDetails
CARG395
DARG395

site_idSWS_FT_FI8
Number of Residues4
DetailsSITE: Critical for catalysis => ECO:0000269|PubMed:7761851, ECO:0000269|PubMed:7819221
ChainResidueDetails
CTYR160
CLYS230
DTYR160
DLYS230

site_idSWS_FT_FI9
Number of Residues4
DetailsMOD_RES: N6-succinyllysine => ECO:0000269|PubMed:21151122
ChainResidueDetails
CLYS100
CLYS242
DLYS100
DLYS242

site_idSWS_FT_FI10
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:2204109, ECO:0000269|PubMed:3112144
ChainResidueDetails
CSER113
DSER113

site_idSWS_FT_FI11
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842
ChainResidueDetails
CLYS142
DLYS142

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 7
ChainResidueDetails
CTYR160electrostatic stabiliser, hydrogen bond donor, proton acceptor, proton donor, proton relay
CLYS230electrostatic stabiliser, proton acceptor, proton donor, proton relay
CASP283electrostatic stabiliser, proton acceptor, proton donor
CASP307metal ligand

site_idMCSA2
Number of Residues4
DetailsM-CSA 7
ChainResidueDetails
DTYR160electrostatic stabiliser, hydrogen bond donor, proton acceptor, proton donor, proton relay
DLYS230electrostatic stabiliser, proton acceptor, proton donor, proton relay
DASP283electrostatic stabiliser, proton acceptor, proton donor
DASP307metal ligand

223166

PDB entries from 2024-07-31

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