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4P0W

Human farnesyl diphosphate synthase in complex with Arenarone and zoledronate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004659molecular_functionprenyltransferase activity
A0008299biological_processisoprenoid biosynthetic process
A0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue 1XH A 500
ChainResidue
AGLY56
AARG112
AARG113
APHE239
AHOH652
ALYS57
ATYR58
AASN59
AARG60
AGLY61
AGLU93
AGLN96
ALEU100

site_idAC2
Number of Residues20
Detailsbinding site for residue ZOL A 501
ChainResidue
AASP103
AASP107
AARG112
ALYS200
ATHR201
AGLN240
AASP243
ALYS257
AMG502
AMG503
AMG504
AHOH620
AHOH622
AHOH629
AHOH630
AHOH642
AHOH643
AHOH644
AHOH646
AHOH647

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 502
ChainResidue
AASP103
AASP107
AZOL501
AMG504
AHOH643
AHOH644

site_idAC4
Number of Residues5
Detailsbinding site for residue MG A 503
ChainResidue
AASP243
AZOL501
AHOH620
AHOH622
AHOH629

site_idAC5
Number of Residues7
Detailsbinding site for residue MG A 504
ChainResidue
AASP103
AASP107
AZOL501
AMG502
AHOH641
AHOH642
AHOH647

Functional Information from PROSITE/UniProt
site_idPS00444
Number of Residues13
DetailsPOLYPRENYL_SYNTHASE_2 Polyprenyl synthases signature 2. MGefFQIqDDYlD
ChainResidueDetails
AMET235-ASP247

site_idPS00723
Number of Residues15
DetailsPOLYPRENYL_SYNTHASE_1 Polyprenyl synthases signature 1. LVaDDim..DssltRRG
ChainResidueDetails
ALEU100-GLY114

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:16684881, ECO:0007744|PDB:1ZW5
ChainResidueDetails
ALYS57
AARG60
AGLN96
AASP103
AASP107
AARG113

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING:
ChainResidueDetails
AARG112
ALYS200
ATHR201
AGLN240
ALYS257

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ALYS266

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Important for determining product chain length => ECO:0000250
ChainResidueDetails
APHE98
APHE99

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS57

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS287

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PDB entries from 2024-07-10

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