4OV5
Structure of HLA-DR1 with a bound peptide with non-optimal alanine in the P1 pocket
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006955 | biological_process | immune response |
| A | 0016020 | cellular_component | membrane |
| A | 0019882 | biological_process | antigen processing and presentation |
| A | 0042613 | cellular_component | MHC class II protein complex |
| B | 0006955 | biological_process | immune response |
| B | 0016020 | cellular_component | membrane |
| B | 0019882 | biological_process | antigen processing and presentation |
| B | 0042613 | cellular_component | MHC class II protein complex |
| D | 0006955 | biological_process | immune response |
| D | 0016020 | cellular_component | membrane |
| D | 0019882 | biological_process | antigen processing and presentation |
| D | 0042613 | cellular_component | MHC class II protein complex |
| E | 0006955 | biological_process | immune response |
| E | 0016020 | cellular_component | membrane |
| E | 0019882 | biological_process | antigen processing and presentation |
| E | 0042613 | cellular_component | MHC class II protein complex |
| G | 0006955 | biological_process | immune response |
| G | 0016020 | cellular_component | membrane |
| G | 0019882 | biological_process | antigen processing and presentation |
| G | 0042613 | cellular_component | MHC class II protein complex |
| H | 0006955 | biological_process | immune response |
| H | 0016020 | cellular_component | membrane |
| H | 0019882 | biological_process | antigen processing and presentation |
| H | 0042613 | cellular_component | MHC class II protein complex |
| J | 0006955 | biological_process | immune response |
| J | 0016020 | cellular_component | membrane |
| J | 0019882 | biological_process | antigen processing and presentation |
| J | 0042613 | cellular_component | MHC class II protein complex |
| K | 0006955 | biological_process | immune response |
| K | 0016020 | cellular_component | membrane |
| K | 0019882 | biological_process | antigen processing and presentation |
| K | 0042613 | cellular_component | MHC class II protein complex |
| M | 0006955 | biological_process | immune response |
| M | 0016020 | cellular_component | membrane |
| M | 0019882 | biological_process | antigen processing and presentation |
| M | 0042613 | cellular_component | MHC class II protein complex |
| N | 0006955 | biological_process | immune response |
| N | 0016020 | cellular_component | membrane |
| N | 0019882 | biological_process | antigen processing and presentation |
| N | 0042613 | cellular_component | MHC class II protein complex |
| P | 0006955 | biological_process | immune response |
| P | 0016020 | cellular_component | membrane |
| P | 0019882 | biological_process | antigen processing and presentation |
| P | 0042613 | cellular_component | MHC class II protein complex |
| Q | 0006955 | biological_process | immune response |
| Q | 0016020 | cellular_component | membrane |
| Q | 0019882 | biological_process | antigen processing and presentation |
| Q | 0042613 | cellular_component | MHC class II protein complex |
Functional Information from PROSITE/UniProt
| site_id | PS00290 |
| Number of Residues | 7 |
| Details | IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCQVEH |
| Chain | Residue | Details |
| B | TYR171-HIS177 | |
| A | TYR161-HIS167 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:21543847 |
| Chain | Residue | Details |
| C | TYR14 | |
| H | TRP61 | |
| H | HIS81 | |
| H | ASN82 | |
| K | ASP57 | |
| K | TRP61 | |
| K | HIS81 | |
| K | ASN82 | |
| N | ASP57 | |
| N | TRP61 | |
| N | HIS81 | |
| F | TYR14 | |
| N | ASN82 | |
| Q | ASP57 | |
| Q | TRP61 | |
| Q | HIS81 | |
| Q | ASN82 | |
| I | TYR14 | |
| L | TYR14 | |
| O | TYR14 | |
| R | TYR14 | |
| E | HIS81 | |
| E | ASN82 | |
| H | ASP57 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:8145819 |
| Chain | Residue | Details |
| B | ARG93 | |
| M | ALA52 | |
| P | GLY49 | |
| P | ALA52 | |
| E | ARG93 | |
| H | ARG93 | |
| K | ARG93 | |
| N | ARG93 | |
| Q | ARG93 | |
| J | GLY49 | |
| J | ALA52 | |
| M | GLY49 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 6 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19303388, ECO:0000269|PubMed:24190431 |
| Chain | Residue | Details |
| B | ASN19 | |
| E | ASN19 | |
| H | ASN19 | |
| K | ASN19 | |
| N | ASN19 | |
| Q | ASN19 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 6 |
| Details | SITE: Self- and pathogen-derived peptide antigen => ECO:0000269|PubMed:17583734, ECO:0000269|PubMed:21115828, ECO:0000269|PubMed:31619516, ECO:0000269|PubMed:8145819 |
| Chain | Residue | Details |
| A | SER53 | |
| D | SER53 | |
| G | SER53 | |
| J | SER53 | |
| M | SER53 | |
| P | SER53 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 6 |
| Details | SITE: Pathogen-derived peptide antigen => ECO:0000269|PubMed:23260142, ECO:0007744|PDB:4GBX |
| Chain | Residue | Details |
| A | GLU55 | |
| D | GLU55 | |
| G | GLU55 | |
| J | GLU55 | |
| M | GLU55 | |
| P | GLU55 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 6 |
| Details | SITE: Self- and pathogen-derived peptide antigen => ECO:0000269|PubMed:17583734, ECO:0000269|PubMed:21115828, ECO:0000269|PubMed:23260142, ECO:0000269|PubMed:31619516, ECO:0000269|PubMed:8145819, ECO:0007744|PDB:4GBX |
| Chain | Residue | Details |
| A | ASN62 | |
| D | ASN62 | |
| G | ASN62 | |
| J | ASN62 | |
| M | ASN62 | |
| P | ASN62 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 6 |
| Details | SITE: Pathogen-derived peptide antigen => ECO:0000269|PubMed:17583734, ECO:0000269|PubMed:21115828, ECO:0000269|PubMed:23260142, ECO:0000269|PubMed:8145819, ECO:0007744|PDB:4FQX, ECO:0007744|PDB:4GBX |
| Chain | Residue | Details |
| A | ASN69 | |
| D | ASN69 | |
| G | ASN69 | |
| J | ASN69 | |
| M | ASN69 | |
| P | ASN69 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 6 |
| Details | SITE: Self- and pathogen-derived peptide antigen => ECO:0000269|PubMed:17583734, ECO:0000269|PubMed:23260142, ECO:0000269|PubMed:31619516, ECO:0000269|PubMed:8145819, ECO:0007744|PDB:4FQX, ECO:0007744|PDB:4GBX |
| Chain | Residue | Details |
| A | ARG76 | |
| D | ARG76 | |
| G | ARG76 | |
| J | ARG76 | |
| M | ARG76 | |
| P | ARG76 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 12 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:7477400 |
| Chain | Residue | Details |
| A | ASN78 | |
| M | ASN118 | |
| P | ASN78 | |
| P | ASN118 | |
| A | ASN118 | |
| D | ASN78 | |
| D | ASN118 | |
| G | ASN78 | |
| G | ASN118 | |
| J | ASN78 | |
| J | ASN118 | |
| M | ASN78 |
