4OI4
Protein complex of Clp1 bound to ATP and Mg2+ with Pcf11deltaN454deltaC563 of S. cerevisiae
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005849 | cellular_component | mRNA cleavage factor complex |
| A | 0006388 | biological_process | tRNA splicing, via endonucleolytic cleavage and ligation |
| A | 0006396 | biological_process | RNA processing |
| A | 0006397 | biological_process | mRNA processing |
| A | 0031124 | biological_process | mRNA 3'-end processing |
| A | 0051731 | molecular_function | polynucleotide 5'-hydroxyl-kinase activity |
| B | 0005849 | cellular_component | mRNA cleavage factor complex |
| B | 0006369 | biological_process | termination of RNA polymerase II transcription |
| B | 0031124 | biological_process | mRNA 3'-end processing |
| C | 0003723 | molecular_function | RNA binding |
| C | 0005515 | molecular_function | protein binding |
| C | 0005524 | molecular_function | ATP binding |
| C | 0005634 | cellular_component | nucleus |
| C | 0005849 | cellular_component | mRNA cleavage factor complex |
| C | 0006388 | biological_process | tRNA splicing, via endonucleolytic cleavage and ligation |
| C | 0006396 | biological_process | RNA processing |
| C | 0006397 | biological_process | mRNA processing |
| C | 0031124 | biological_process | mRNA 3'-end processing |
| C | 0051731 | molecular_function | polynucleotide 5'-hydroxyl-kinase activity |
| D | 0005849 | cellular_component | mRNA cleavage factor complex |
| D | 0006369 | biological_process | termination of RNA polymerase II transcription |
| D | 0031124 | biological_process | mRNA 3'-end processing |
| U | 0005849 | cellular_component | mRNA cleavage factor complex |
| U | 0006369 | biological_process | termination of RNA polymerase II transcription |
| U | 0031124 | biological_process | mRNA 3'-end processing |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 24 |
| Details | BINDING SITE FOR RESIDUE ATP A 501 |
| Chain | Residue |
| A | ASP33 |
| A | LYS136 |
| A | THR137 |
| A | SER138 |
| A | SER254 |
| A | ASP311 |
| A | GLY312 |
| A | VAL313 |
| A | SER314 |
| A | LYS321 |
| A | MG502 |
| A | GLN35 |
| A | GOL503 |
| A | HOH675 |
| A | HOH687 |
| A | HOH698 |
| A | HOH712 |
| A | PHE56 |
| A | LYS72 |
| A | PRO74 |
| A | SER132 |
| A | GLN133 |
| A | THR134 |
| A | GLY135 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG A 502 |
| Chain | Residue |
| A | THR137 |
| A | ATP501 |
| A | HOH613 |
| A | HOH687 |
| A | HOH698 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL A 503 |
| Chain | Residue |
| A | TRP71 |
| A | SER138 |
| A | ARG141 |
| A | PRO187 |
| A | TRP189 |
| A | ATP501 |
| A | HOH675 |
| site_id | AC4 |
| Number of Residues | 21 |
| Details | BINDING SITE FOR RESIDUE ATP C 501 |
| Chain | Residue |
| C | ASP33 |
| C | GLN35 |
| C | PHE56 |
| C | LYS72 |
| C | PRO74 |
| C | SER132 |
| C | GLN133 |
| C | THR134 |
| C | GLY135 |
| C | LYS136 |
| C | THR137 |
| C | SER138 |
| C | SER254 |
| C | ASP311 |
| C | GLY312 |
| C | VAL313 |
| C | SER314 |
| C | LYS321 |
| C | MG502 |
| C | GOL503 |
| C | HOH668 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG C 502 |
| Chain | Residue |
| C | THR137 |
| C | ATP501 |
| C | HOH651 |
| C | HOH667 |
| C | HOH668 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL C 503 |
| Chain | Residue |
| C | PHE56 |
| C | TRP71 |
| C | THR137 |
| C | ARG141 |
| C | PRO187 |
| C | TRP189 |
| C | ATP501 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL C 504 |
| Chain | Residue |
| C | THR67 |
| C | GLN185 |
| C | LEU186 |
| C | SER336 |
| C | LEU337 |
| C | ASP338 |
| C | HOH631 |
| C | HOH652 |
Functional Information from PROSITE/UniProt
| site_id | PS00430 |
| Number of Residues | 108 |
| Details | TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mahhhhhhmaslpgidehttseelitgdnewhklvipkgsdwqidlkaegklivkvnsgiveifgtelavddeytfqnwkfpiyaveetellwkcpdltt...............NTITVKPN |
| Chain | Residue | Details |
| A | MET-7-ASN100 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03035, ECO:0000269|PubMed:17151076 |
| Chain | Residue | Details |
| A | ASP33 | |
| A | LYS72 | |
| A | GLN133 | |
| C | ASP33 | |
| C | LYS72 | |
| C | GLN133 |
