4OGQ
Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome b6f Complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0009055 | molecular_function | electron transfer activity |
A | 0009579 | cellular_component | thylakoid |
A | 0015979 | biological_process | photosynthesis |
A | 0016020 | cellular_component | membrane |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0022904 | biological_process | respiratory electron transport chain |
A | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
A | 0042651 | cellular_component | thylakoid membrane |
A | 0045158 | molecular_function | electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity |
A | 0046872 | molecular_function | metal ion binding |
B | 0009055 | molecular_function | electron transfer activity |
B | 0009579 | cellular_component | thylakoid |
B | 0009767 | biological_process | photosynthetic electron transport chain |
B | 0015979 | biological_process | photosynthesis |
B | 0016020 | cellular_component | membrane |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
B | 0042651 | cellular_component | thylakoid membrane |
B | 0043229 | cellular_component | intracellular organelle |
B | 0045156 | molecular_function | electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity |
B | 0045158 | molecular_function | electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity |
C | 0005506 | molecular_function | iron ion binding |
C | 0009055 | molecular_function | electron transfer activity |
C | 0015979 | biological_process | photosynthesis |
C | 0020037 | molecular_function | heme binding |
C | 0042651 | cellular_component | thylakoid membrane |
D | 0009496 | molecular_function | plastoquinol--plastocyanin reductase activity |
D | 0009579 | cellular_component | thylakoid |
D | 0015979 | biological_process | photosynthesis |
D | 0016020 | cellular_component | membrane |
D | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
D | 0042651 | cellular_component | thylakoid membrane |
D | 0045158 | molecular_function | electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity |
D | 0046872 | molecular_function | metal ion binding |
D | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
D | 0055085 | biological_process | transmembrane transport |
E | 0009055 | molecular_function | electron transfer activity |
E | 0009512 | cellular_component | cytochrome b6f complex |
E | 0009579 | cellular_component | thylakoid |
E | 0015979 | biological_process | photosynthesis |
E | 0016020 | cellular_component | membrane |
E | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
E | 0042651 | cellular_component | thylakoid membrane |
E | 0045158 | molecular_function | electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity |
F | 0009055 | molecular_function | electron transfer activity |
F | 0009512 | cellular_component | cytochrome b6f complex |
F | 0009579 | cellular_component | thylakoid |
F | 0015979 | biological_process | photosynthesis |
F | 0016020 | cellular_component | membrane |
F | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
F | 0042651 | cellular_component | thylakoid membrane |
G | 0009512 | cellular_component | cytochrome b6f complex |
G | 0009579 | cellular_component | thylakoid |
G | 0015979 | biological_process | photosynthesis |
G | 0016020 | cellular_component | membrane |
G | 0017004 | biological_process | cytochrome complex assembly |
G | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
G | 0042651 | cellular_component | thylakoid membrane |
G | 0045158 | molecular_function | electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity |
H | 0009055 | molecular_function | electron transfer activity |
H | 0009512 | cellular_component | cytochrome b6f complex |
H | 0009579 | cellular_component | thylakoid |
H | 0015979 | biological_process | photosynthesis |
H | 0016020 | cellular_component | membrane |
H | 0017004 | biological_process | cytochrome complex assembly |
H | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
H | 0042651 | cellular_component | thylakoid membrane |
H | 0043229 | cellular_component | intracellular organelle |
H | 0045158 | molecular_function | electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE HEC A 301 |
Chain | Residue |
A | GLN47 |
A | GLY135 |
A | LEU138 |
A | PRO139 |
A | HIS187 |
A | PHE189 |
B | GLU78 |
A | PHE48 |
A | GLY51 |
A | MET54 |
A | ARG83 |
A | HIS86 |
A | ARG87 |
A | ALA90 |
A | PHE131 |
site_id | AC2 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE HEC A 302 |
Chain | Residue |
A | TYR34 |
A | GLY37 |
A | GLY38 |
A | MET93 |
A | HIS100 |
A | VAL101 |
A | ARG103 |
A | VAL104 |
A | GLY109 |
A | ARG114 |
A | THR117 |
A | TRP118 |
A | GLY121 |
A | MET199 |
A | HIS202 |
A | PHE203 |
A | ILE206 |
A | ILE211 |
A | SER212 |
A | HEC303 |
A | HOH401 |
A | HOH406 |
site_id | AC3 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE HEC A 303 |
Chain | Residue |
A | TYR34 |
A | CYS35 |
A | GLY38 |
A | LEU41 |
A | ARG207 |
A | GLY210 |
A | ILE211 |
A | HEC302 |
A | HOH401 |
A | HOH410 |
A | HOH416 |
A | HOH417 |
B | ASN25 |
B | PHE40 |
B | UMQ203 |
H | ARG26 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE UMQ A 304 |
Chain | Residue |
A | TYR5 |
B | UMQ201 |
D | SQD204 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE 7PH A 305 |
Chain | Residue |
A | VAL4 |
A | TRP7 |
B | PHE113 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE 8K6 A 306 |
Chain | Residue |
A | VAL197 |
A | LEU200 |
A | PHE201 |
A | 8K6307 |
A | 8K6308 |
B | CLA204 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE 8K6 A 307 |
Chain | Residue |
A | MET205 |
A | LYS208 |
A | 8K6306 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE 8K6 A 308 |
Chain | Residue |
A | SER130 |
A | THR134 |
A | LEU169 |
A | ALA186 |
A | 8K6306 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE 2WM A 309 |
Chain | Residue |
A | LEU45 |
A | PHE52 |
A | LEU194 |
A | PHE203 |
D | VAL38 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE UMQ B 201 |
Chain | Residue |
A | ALA18 |
A | GLU19 |
A | THR22 |
A | UMQ304 |
B | TRP32 |
C | ASN288 |
D | SQD204 |
site_id | BC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE 8K6 B 202 |
Chain | Residue |
B | LEU36 |
B | PHE40 |
B | PRO41 |
site_id | BC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE UMQ B 203 |
Chain | Residue |
A | LYS24 |
A | ARG207 |
A | HEC303 |
B | ALA31 |
B | LEU36 |
B | PHE40 |
B | PRO41 |
B | HOH301 |
site_id | BC4 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE CLA B 204 |
Chain | Residue |
A | 8K6306 |
B | TYR80 |
B | VAL84 |
B | LEU108 |
B | PHE133 |
B | GLY136 |
B | THR140 |
B | OPC205 |
B | HOH308 |
B | HOH316 |
F | 2WA101 |
A | PHE102 |
A | TYR105 |
A | VAL129 |
site_id | BC5 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE OPC B 205 |
Chain | Residue |
A | TYR105 |
B | ALA100 |
B | SER103 |
B | VAL111 |
B | ILE114 |
B | GLU115 |
B | ASN118 |
B | ARG126 |
B | PRO127 |
B | VAL128 |
B | ALA129 |
B | CLA204 |
B | HOH306 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE 7PH B 206 |
Chain | Residue |
B | PHE124 |
B | THR130 |
B | THR131 |
B | LEU134 |
G | PHE22 |
site_id | BC7 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE HEC C 301 |
Chain | Residue |
C | TYR1 |
C | PRO2 |
C | TRP4 |
C | ALA5 |
C | CYS22 |
C | CYS25 |
C | HIS26 |
C | GLN60 |
C | LEU70 |
C | ASN71 |
C | VAL72 |
C | GLY73 |
C | ALA74 |
C | VAL75 |
C | ASN154 |
C | GLY156 |
C | ARG157 |
C | GLY158 |
C | VAL160 |
C | TYR161 |
C | HOH435 |
site_id | BC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CD C 302 |
Chain | Residue |
A | GLU75 |
C | LYS140 |
C | HIS143 |
site_id | BC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE 7PH C 303 |
Chain | Residue |
C | ALA252 |
C | ASN253 |
C | GLY256 |
C | TRP257 |
C | ALA260 |
E | PHE10 |
H | ILE3 |
site_id | CC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE UMQ D 201 |
Chain | Residue |
D | GLY14 |
D | PHE18 |
D | LEU22 |
E | LEU25 |
site_id | CC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MYS D 202 |
Chain | Residue |
A | LEU168 |
D | PHE42 |
site_id | CC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE 7PH D 203 |
Chain | Residue |
C | ASP251 |
C | TRP257 |
C | PHE261 |
D | GLY33 |
D | TYR36 |
site_id | CC4 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE SQD D 204 |
Chain | Residue |
A | UMQ304 |
B | TRP32 |
B | TYR38 |
B | UMQ201 |
B | HOH307 |
C | LYS275 |
D | ARG16 |
D | ASN20 |
D | PHE24 |
D | GLY25 |
D | THR28 |
D | GLY29 |
site_id | CC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE FES D 205 |
Chain | Residue |
D | CYS108 |
D | HIS110 |
D | LEU111 |
D | CYS126 |
D | HIS129 |
D | SER131 |
site_id | CC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE 2WD D 206 |
Chain | Residue |
D | TYR36 |
D | VAL39 |
D | ILE43 |
site_id | CC7 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE 3WM E 101 |
Chain | Residue |
A | CYS43 |
A | MET92 |
A | MET96 |
C | GLN38 |
C | SER39 |
E | ALA3 |
E | ILE4 |
E | TYR7 |
E | ILE8 |
F | GLU4 |
F | 1O2103 |
H | THR5 |
H | TRP8 |
H | LEU12 |
H | PHE15 |
site_id | CC8 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE 2WA F 101 |
Chain | Residue |
B | CLA204 |
F | MET1 |
F | SER2 |
F | LEU5 |
F | ALA9 |
F | PHE13 |
G | VAL2 |
G | ILE14 |
site_id | CC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE OCT F 102 |
Chain | Residue |
F | ASN7 |
F | LEU10 |
site_id | DC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE 1O2 F 103 |
Chain | Residue |
E | ILE8 |
E | ALA12 |
E | GLY16 |
E | PHE23 |
E | 3WM101 |
F | LYS28 |
F | ILE29 |
F | GLY31 |
site_id | DC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE 7PH F 104 |
Chain | Residue |
F | PHE17 |
F | TRP20 |
F | ALA24 |
G | TYR23 |
G | BCR102 |
site_id | DC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE UMQ G 101 |
Chain | Residue |
G | TYR26 |
G | TYR29 |
G | LYS30 |
site_id | DC4 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE BCR G 102 |
Chain | Residue |
A | ILE32 |
A | PHE33 |
A | ILE39 |
A | MET96 |
F | ILE16 |
F | PHE17 |
F | TRP20 |
F | 7PH104 |
G | VAL16 |
G | ALA19 |
G | GLY20 |
G | TYR23 |
H | PHE15 |
H | SER18 |
H | ILE19 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 20 |
Details | TRANSMEM: Helical => ECO:0000255 |
Chain | Residue | Details |
H | ILE3-VAL23 | |
B | LEU95-GLU115 | |
B | THR131-LEU151 | |
A | ALA186-ILE206 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01335 |
Chain | Residue | Details |
D | CYS108 | |
D | HIS110 | |
D | CYS126 | |
D | HIS129 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: covalent => ECO:0000255|HAMAP-Rule:MF_00610 |
Chain | Residue | Details |
C | CYS22 | |
C | CYS25 | |
A | HIS187 | |
A | HIS202 |