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4NVQ

Human G9a in Complex with Inhibitor A-366

Functional Information from GO Data
ChainGOidnamespacecontents
A0002039molecular_functionp53 binding
A0005634cellular_componentnucleus
A0008270molecular_functionzinc ion binding
A0016279molecular_functionprotein-lysine N-methyltransferase activity
A0042054molecular_functionhistone methyltransferase activity
B0002039molecular_functionp53 binding
B0005634cellular_componentnucleus
B0008270molecular_functionzinc ion binding
B0016279molecular_functionprotein-lysine N-methyltransferase activity
B0042054molecular_functionhistone methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 2OD A 1201
ChainResidue
ATYR1067
ATYR1154
AARG1157
APHE1158
AHOH1356
AHOH1433
AASP1074
AALA1077
AASP1078
AASP1083
ASER1084
ALEU1086
AASP1088
APHE1152

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE SAH A 1202
ChainResidue
AMET1048
AGLY1049
ATRP1050
ASER1084
ATYR1085
AARG1109
APHE1110
AASN1112
AHIS1113
ATYR1154
APHE1158
APHE1166
ATHR1167
ACYS1168
AGLN1169

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 1203
ChainResidue
ACYS974
ACYS987
ACYS1017
ACYS1021
AZN1204

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 1204
ChainResidue
ACYS974
ACYS976
ACYS980
ACYS985
AZN1203

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 1205
ChainResidue
ACYS980
ACYS1017
ACYS1023
ACYS1027
AHOH1425

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1206
ChainResidue
ACYS1115
ACYS1168
ACYS1170
ACYS1175

site_idAC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE SAH B 1201
ChainResidue
BMET1048
BTRP1050
BSER1084
BTYR1085
BARG1109
BPHE1110
BASN1112
BHIS1113
BTYR1154
BPHE1158
BPHE1166
BTHR1167
BCYS1168
BGLN1169
BHOH1395

site_idAC8
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 2OD B 1202
ChainResidue
BTYR1067
BASP1074
BALA1077
BASP1078
BASP1083
BSER1084
BLEU1086
BASP1088
BPHE1152
BTYR1154
BARG1157
BPHE1158
BILE1161
BHOH1359

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 1203
ChainResidue
BCYS980
BCYS1017
BCYS1023
BCYS1027

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 1204
ChainResidue
BCYS974
BCYS976
BCYS980
BCYS985

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 1205
ChainResidue
BCYS974
BCYS987
BCYS1017
BCYS1021

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 1206
ChainResidue
BCYS1115
BCYS1168
BCYS1170
BCYS1175

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues63
DetailsDomain: {"description":"Pre-SET","evidences":[{"source":"PROSITE-ProRule","id":"PRU00157","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsRegion: {"description":"Interaction with histone H3","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues36
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsSite: {"description":"Histone H3K9me binding","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues16
DetailsDomain: {"description":"Post-SET"}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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