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4NT0

Crystal structure of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 3-deazauridine 5'-monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE 3DU A 301
ChainResidue
AASP20
AHOH419
AHOH434
AHOH435
AHOH448
AHOH452
AHOH453
AHOH460
AHOH472
BASP75
BILE76
ALYS42
BTHR79
AASP70
ALYS72
AMET126
ASER127
APRO180
AGLY202
AARG203

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 302
ChainResidue
AARG5
AVAL8
AASP10
AHOH431
AHOH465

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEG A 303
ChainResidue
AGLY52
AMET53
AASP54
AHOH426
BGLY52
BMET53
BASP54
BHOH421

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 3DU B 301
ChainResidue
AASP75
ATHR79
BASP20
BLYS42
BASP70
BLYS72
BMET126
BSER127
BGLY202
BARG203
BHOH413
BHOH423
BHOH426
BHOH446
BHOH448
BHOH450
BHOH457

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 302
ChainResidue
BARG5
BVAL8
BASP10
BHOH463
BHOH465

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDfKvaDIPeTN
ChainResidueDetails
AILE67-ASN80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS72
BLYS72

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP20
BASP70
BSER127
BPRO180
BGLY202
BARG203
ALYS42
AASP70
ASER127
APRO180
AGLY202
AARG203
BASP20
BLYS42

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PDB entries from 2024-07-17

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