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4NQL

The crystal structure of the DUB domain of AMSH orthologue, Sst2 from S. pombe, in complex with lysine 63-linked diubiquitin

Functional Information from GO Data
ChainGOidnamespacecontents
A0008233molecular_functionpeptidase activity
A0008237molecular_functionmetallopeptidase activity
A0016579biological_processprotein deubiquitination
A0061578molecular_functionK63-linked deubiquitinase activity
A0070536biological_processprotein K63-linked deubiquitination
A0140492molecular_functionmetal-dependent deubiquitinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 501
ChainResidue
AHIS356
ACYS397
AHIS404
AHIS406

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 502
ChainResidue
BLEU71
BEDO101
ALEU325
AGLN329
ATHR336
ATYR361
BLEU8

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 503
ChainResidue
AASN284
ASER314
AASP315
ATHR345
AHOH622

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 504
ChainResidue
ATHR316
ACYS317
AGLY318
BTHR22
BGLY53
BARG74

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 505
ChainResidue
AGLY381
AILE382
AMET413
AVAL414
AGLN416

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 506
ChainResidue
ALYS258
AGLN362
APRO366
AASP387

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 101
ChainResidue
AEDO502
BTHR7
BLEU8
BLEU69
BVAL70
BLEU71

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C 101
ChainResidue
APHE349
CGLN62
CLYS63
CGLU64
CSER65

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
CLYS27-ASP52
BLYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
CARG54
CARG72
AALA354

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Essential for function
ChainResidueDetails
CHIS68
ACYS397
AHIS404
AHIS406

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
CSER65

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
CGLY76

site_idSWS_FT_FI5
Number of Residues7
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
CLYS11
CLYS27
CLYS29
CLYS33
CLYS48
CLYS63
CLYS6

site_idSWS_FT_FI6
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|PROSITE-ProRule:PRU00214
ChainResidueDetails
CGLY76

218500

PDB entries from 2024-04-17

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