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4NQ1

Legionella pneumophila dihydrodipicolinate synthase with first substrate pyruvate bound in the active site

Functional Information from GO Data
ChainGOidnamespacecontents
A0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0016829molecular_functionlyase activity
B0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
B0009089biological_processlysine biosynthetic process via diaminopimelate
B0016829molecular_functionlyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MRD A 301
ChainResidue
BHOH481

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 302
ChainResidue
APRO12
AMET13
ALYS252
AGLY263
AGLU264

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 303
ChainResidue
AHOH536
AVAL134
APRO135
AGLY136

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CL A 304
ChainResidue
ALEU188
ATHR189
AALA191
AGLN192
AGLN232
AHOH574
AHOH577

site_idAC5
Number of Residues12
DetailsBINDING SITE FOR RESIDUE MG A 305
ChainResidue
AHOH628
AHOH631
AHOH825
AHOH826
AHOH827
AHOH838
BHOH619
BHOH858
BHOH859
BHOH860
BHOH861
BHOH862

site_idAC6
Number of Residues12
DetailsBINDING SITE FOR RESIDUE MG A 306
ChainResidue
AHOH828
AHOH829
AHOH830
AHOH831
AHOH839
AHOH840
BHOH666
BHOH863
BHOH873
BHOH874
BHOH875
BHOH877

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MPD B 301
ChainResidue
BTHR81
BLYS82
BILE85
BHIS120
BHOH542
BHOH616
BHOH741

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 302
ChainResidue
AHOH594
BVAL134
BPRO135
BGLY136
BHOH498

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL B 303
ChainResidue
BLEU188
BTHR189
BALA191
BGLN192
BGLN232
BHOH599

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 304
ChainResidue
BPRO12
BMET13
BLYS252
BGLY263
BGLU264

site_idBC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE MG B 305
ChainResidue
AHOH628
AHOH631
AHOH825
AHOH826
AHOH827
AHOH838
BHOH619
BHOH858
BHOH859
BHOH860
BHOH861
BHOH862

site_idBC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE MG B 306
ChainResidue
AHOH828
AHOH829
AHOH830
AHOH831
AHOH839
AHOH840
BHOH666
BHOH863
BHOH873
BHOH874
BHOH875
BHOH877

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 307
ChainResidue
AHOH547
BHOH474
BHOH536
BHOH620
BHOH664
BHOH665

Functional Information from PROSITE/UniProt
site_idPS00665
Number of Residues18
DetailsDHDPS_1 Dihydrodipicolinate synthase signature 1. ALVaaGTTGEAgtlshsE
ChainResidueDetails
AALA37-GLU54

site_idPS00666
Number of Residues31
DetailsDHDPS_2 Dihydrodipicolinate synthase signature 2. YNVPgrTacdMlpetvarlakisn.IiGIKEA
ChainResidueDetails
ATYR132-ALA162

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PDB entries from 2024-07-24

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