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4NM6

Crystal structure of TET2-DNA complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0006211biological_process5-methylcytosine catabolic process
A0070579molecular_function5-methylcytosine dioxygenase activity
A0080111biological_processobsolete DNA demethylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 2001
ChainResidue
ACYS1193
ACYS1271
ACYS1273
AHIS1380

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 2002
ChainResidue
ACYS1133
ACYS1135
AHIS1219
ACYS1221

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 2003
ChainResidue
ACYS1298
ACYS1358
AHIS1912
ACYS1289

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE2 A 2004
ChainResidue
AHIS1382
AASP1384
AHIS1881
AOGA2005
AHOH2149

site_idAC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE OGA A 2005
ChainResidue
AARG1261
ACYS1374
AHIS1382
AASP1384
AHIS1416
AHIS1881
ATHR1883
AARG1896
ASER1898
AFE22004
AHOH2142
AHOH2149
B5CM6

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues21
DetailsBINDING: BINDING => ECO:0000269|PubMed:24315485
ChainResidueDetails
ACYS1133
ACYS1298
ACYS1358
ACYS1374
AHIS1380
AHIS1382
AASP1384
AASN1387
AHIS1416
AHIS1881
AARG1896
ACYS1135
ATYR1902
AHIS1912
ACYS1193
AHIS1219
ACYS1221
AARG1261
ACYS1271
ACYS1273
ACYS1289

site_idSWS_FT_FI2
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25557551
ChainResidueDetails
ALYS1299

221371

PDB entries from 2024-06-19

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