4NB4
Pantothenamide-bound Pantothenate kinase from Staphylococcus aureus
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004594 | molecular_function | pantothenate kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0015937 | biological_process | coenzyme A biosynthetic process |
A | 0016301 | molecular_function | kinase activity |
B | 0004594 | molecular_function | pantothenate kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0015937 | biological_process | coenzyme A biosynthetic process |
B | 0016301 | molecular_function | kinase activity |
C | 0004594 | molecular_function | pantothenate kinase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0015937 | biological_process | coenzyme A biosynthetic process |
C | 0016301 | molecular_function | kinase activity |
D | 0004594 | molecular_function | pantothenate kinase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0015937 | biological_process | coenzyme A biosynthetic process |
D | 0016301 | molecular_function | kinase activity |
E | 0004594 | molecular_function | pantothenate kinase activity |
E | 0005524 | molecular_function | ATP binding |
E | 0005737 | cellular_component | cytoplasm |
E | 0015937 | biological_process | coenzyme A biosynthetic process |
E | 0016301 | molecular_function | kinase activity |
F | 0004594 | molecular_function | pantothenate kinase activity |
F | 0005524 | molecular_function | ATP binding |
F | 0005737 | cellular_component | cytoplasm |
F | 0015937 | biological_process | coenzyme A biosynthetic process |
F | 0016301 | molecular_function | kinase activity |
G | 0004594 | molecular_function | pantothenate kinase activity |
G | 0005524 | molecular_function | ATP binding |
G | 0005737 | cellular_component | cytoplasm |
G | 0015937 | biological_process | coenzyme A biosynthetic process |
G | 0016301 | molecular_function | kinase activity |
H | 0004594 | molecular_function | pantothenate kinase activity |
H | 0005524 | molecular_function | ATP binding |
H | 0005737 | cellular_component | cytoplasm |
H | 0015937 | biological_process | coenzyme A biosynthetic process |
H | 0016301 | molecular_function | kinase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE ADP A 301 |
Chain | Residue |
A | GLY8 |
A | GLY122 |
A | GLN125 |
A | TYR137 |
A | GLY224 |
A | SER225 |
A | SER226 |
A | SH3302 |
A | MG304 |
A | HOH417 |
A | HOH430 |
A | GLY9 |
A | HOH431 |
A | THR10 |
A | LEU11 |
A | LYS13 |
A | LEU28 |
A | GLY98 |
A | THR99 |
A | GLY121 |
site_id | AC2 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE SH3 A 302 |
Chain | Residue |
A | GLY9 |
A | GLU70 |
A | PHE71 |
A | THR99 |
A | GLY100 |
A | THR101 |
A | SER102 |
A | ARG113 |
A | GLY116 |
A | ILE117 |
A | ADP301 |
A | MG304 |
A | HOH416 |
A | HOH417 |
A | HOH419 |
A | HOH420 |
B | LEU171 |
B | THR172 |
B | ALA173 |
B | GLU202 |
B | THR206 |
B | TYR240 |
site_id | AC3 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE SH3 A 303 |
Chain | Residue |
A | LEU171 |
A | THR172 |
A | ALA173 |
A | GLU202 |
A | TYR240 |
A | HOH418 |
B | GLY9 |
B | GLU70 |
B | THR99 |
B | GLY100 |
B | THR101 |
B | SER102 |
B | ARG113 |
B | GLY116 |
B | ADP301 |
B | MG302 |
B | HOH422 |
B | HOH424 |
B | HOH425 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 304 |
Chain | Residue |
A | ADP301 |
A | SH3302 |
A | HOH416 |
A | HOH417 |
A | HOH430 |
A | HOH452 |
site_id | AC5 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE ADP B 301 |
Chain | Residue |
A | SH3303 |
B | GLY8 |
B | GLY9 |
B | THR10 |
B | LEU11 |
B | LYS13 |
B | LEU28 |
B | GLY98 |
B | THR99 |
B | GLY121 |
B | GLY122 |
B | GLN125 |
B | TYR137 |
B | GLY224 |
B | SER225 |
B | SER226 |
B | MG302 |
B | HOH405 |
B | HOH423 |
B | HOH424 |
B | HOH479 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B 302 |
Chain | Residue |
A | SH3303 |
A | HOH418 |
B | ADP301 |
B | HOH422 |
B | HOH423 |
B | HOH424 |
site_id | AC7 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE ADP C 301 |
Chain | Residue |
C | GLY98 |
C | THR99 |
C | GLY121 |
C | GLY122 |
C | GLN125 |
C | TYR137 |
C | GLY224 |
C | SER225 |
C | SER226 |
C | SH3302 |
C | MG304 |
C | HOH416 |
C | HOH426 |
C | HOH434 |
C | HOH435 |
C | GLY8 |
C | GLY9 |
C | THR10 |
C | LEU11 |
C | LYS13 |
site_id | AC8 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE SH3 C 302 |
Chain | Residue |
C | GLY9 |
C | GLU70 |
C | THR99 |
C | GLY100 |
C | THR101 |
C | SER102 |
C | ARG113 |
C | GLY116 |
C | ILE117 |
C | ADP301 |
C | MG304 |
C | HOH404 |
C | HOH405 |
C | HOH416 |
C | HOH426 |
C | HOH454 |
D | VAL156 |
D | ILE159 |
D | LEU171 |
D | THR172 |
D | ALA173 |
D | GLU202 |
D | THR206 |
D | TYR240 |
site_id | AC9 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE SH3 C 303 |
Chain | Residue |
C | ILE159 |
C | THR172 |
C | ALA173 |
C | GLU202 |
C | THR206 |
C | TYR240 |
D | GLY9 |
D | GLU70 |
D | PHE71 |
D | THR99 |
D | GLY100 |
D | THR101 |
D | SER102 |
D | ARG113 |
D | GLY116 |
D | ILE117 |
D | ADP301 |
D | MG302 |
D | HOH410 |
D | HOH414 |
D | HOH418 |
D | HOH434 |
site_id | BC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG C 304 |
Chain | Residue |
C | ADP301 |
C | SH3302 |
C | HOH404 |
C | HOH416 |
C | HOH426 |
C | HOH434 |
site_id | BC2 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE ADP D 301 |
Chain | Residue |
C | SH3303 |
D | GLY8 |
D | GLY9 |
D | THR10 |
D | LEU11 |
D | LYS13 |
D | GLY98 |
D | THR99 |
D | GLY121 |
D | GLY122 |
D | GLN125 |
D | TYR137 |
D | GLY224 |
D | SER225 |
D | SER226 |
D | MG302 |
D | HOH418 |
D | HOH419 |
site_id | BC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG D 302 |
Chain | Residue |
C | SH3303 |
D | ADP301 |
D | HOH410 |
D | HOH418 |
D | HOH419 |
site_id | BC4 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE ADP E 301 |
Chain | Residue |
E | GLY8 |
E | GLY9 |
E | THR10 |
E | LEU11 |
E | LYS13 |
E | GLY98 |
E | THR99 |
E | GLY121 |
E | GLY122 |
E | GLN125 |
E | TYR137 |
E | SER225 |
E | SER226 |
E | MG302 |
E | HOH403 |
E | HOH404 |
F | SH3302 |
site_id | BC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG E 302 |
Chain | Residue |
E | ADP301 |
E | HOH404 |
E | HOH423 |
F | SH3302 |
site_id | BC6 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE ADP F 301 |
Chain | Residue |
F | GLY8 |
F | GLY9 |
F | THR10 |
F | LEU11 |
F | LYS13 |
F | GLY98 |
F | THR99 |
F | GLY121 |
F | GLY122 |
F | GLN125 |
F | TYR137 |
F | GLY224 |
F | SER225 |
F | SER226 |
F | HIS228 |
F | SH3303 |
F | MG304 |
F | HOH406 |
F | HOH425 |
site_id | BC7 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE SH3 F 302 |
Chain | Residue |
E | GLY9 |
E | GLU70 |
E | THR99 |
E | GLY100 |
E | THR101 |
E | SER102 |
E | ARG113 |
E | GLY116 |
E | ADP301 |
E | MG302 |
E | HOH423 |
F | THR172 |
F | ALA173 |
F | GLU202 |
F | THR206 |
F | TYR240 |
F | HOH423 |
F | HOH426 |
site_id | BC8 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE SH3 F 303 |
Chain | Residue |
E | THR172 |
E | ALA173 |
E | GLU202 |
E | THR206 |
E | TYR240 |
F | GLY9 |
F | GLU70 |
F | THR99 |
F | GLY100 |
F | THR101 |
F | SER102 |
F | ARG113 |
F | GLY116 |
F | ILE117 |
F | ADP301 |
F | MG304 |
F | HOH406 |
F | HOH413 |
F | HOH427 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG F 304 |
Chain | Residue |
F | GLU70 |
F | ADP301 |
F | SH3303 |
F | HOH413 |
site_id | CC1 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE ADP G 301 |
Chain | Residue |
G | GLY8 |
G | GLY9 |
G | THR10 |
G | LEU11 |
G | LYS13 |
G | GLY98 |
G | THR99 |
G | GLY121 |
G | GLY122 |
G | GLN125 |
G | TYR137 |
G | SER225 |
G | SER226 |
G | SH3302 |
G | MG303 |
G | HOH406 |
G | HOH425 |
G | HOH427 |
site_id | CC2 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE SH3 G 302 |
Chain | Residue |
G | GLY9 |
G | GLU70 |
G | THR99 |
G | GLY100 |
G | THR101 |
G | SER102 |
G | ARG113 |
G | GLY116 |
G | ILE117 |
G | ADP301 |
G | MG303 |
G | HOH403 |
G | HOH425 |
G | HOH428 |
G | HOH436 |
H | LEU171 |
H | THR172 |
H | ALA173 |
H | GLU202 |
H | THR206 |
H | TYR240 |
H | HOH446 |
site_id | CC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG G 303 |
Chain | Residue |
G | ADP301 |
G | SH3302 |
G | HOH425 |
G | HOH426 |
G | HOH427 |
G | HOH436 |
site_id | CC4 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE ADP H 301 |
Chain | Residue |
H | GLY8 |
H | GLY9 |
H | THR10 |
H | LEU11 |
H | LYS13 |
H | GLY98 |
H | THR99 |
H | GLY121 |
H | GLY122 |
H | GLN125 |
H | TYR137 |
H | GLY224 |
H | SER225 |
H | SER226 |
H | SH3302 |
H | MG303 |
H | HOH417 |
H | HOH421 |
H | HOH423 |
site_id | CC5 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE SH3 H 302 |
Chain | Residue |
G | VAL156 |
G | ILE159 |
G | LEU171 |
G | THR172 |
G | ALA173 |
G | GLU202 |
G | THR206 |
G | TYR240 |
H | GLY9 |
H | GLU70 |
H | THR99 |
H | GLY100 |
H | THR101 |
H | SER102 |
H | ARG113 |
H | GLY116 |
H | ADP301 |
H | MG303 |
H | HOH408 |
H | HOH421 |
H | HOH422 |
H | HOH434 |
site_id | CC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG H 303 |
Chain | Residue |
H | ADP301 |
H | SH3302 |
H | HOH421 |
H | HOH422 |
H | HOH423 |
H | HOH434 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | ACT_SITE: Proton acceptor |
Chain | Residue | Details |
A | GLU70 | |
B | GLU70 | |
C | GLU70 | |
D | GLU70 | |
E | GLU70 | |
F | GLU70 | |
G | GLU70 | |
H | GLU70 |
site_id | SWS_FT_FI2 |
Number of Residues | 40 |
Details | BINDING: |
Chain | Residue | Details |
A | ASP6 | |
B | SER225 | |
C | ASP6 | |
C | THR99 | |
C | GLY121 | |
C | TYR137 | |
C | SER225 | |
D | ASP6 | |
D | THR99 | |
D | GLY121 | |
D | TYR137 | |
A | THR99 | |
D | SER225 | |
E | ASP6 | |
E | THR99 | |
E | GLY121 | |
E | TYR137 | |
E | SER225 | |
F | ASP6 | |
F | THR99 | |
F | GLY121 | |
F | TYR137 | |
A | GLY121 | |
F | SER225 | |
G | ASP6 | |
G | THR99 | |
G | GLY121 | |
G | TYR137 | |
G | SER225 | |
H | ASP6 | |
H | THR99 | |
H | GLY121 | |
H | TYR137 | |
A | TYR137 | |
H | SER225 | |
A | SER225 | |
B | ASP6 | |
B | THR99 | |
B | GLY121 | |
B | TYR137 |