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4MPV

Human beta-tryptase co-crystal structure with (2R,4S)-N,N'-bis[3-({4-[3-(aminomethyl)phenyl]piperidin-1-yl}carbonyl)phenyl]-4-hydroxy-2-(2-hydroxypropan-2-yl)-5,5-dimethyl-1,3-dioxolane-2,4-dicarboxamide

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0006508biological_processproteolysis
A0006952biological_processdefense response
A0008233molecular_functionpeptidase activity
A0008236molecular_functionserine-type peptidase activity
A0016787molecular_functionhydrolase activity
A0022617biological_processextracellular matrix disassembly
A0031012cellular_componentextracellular matrix
A0042802molecular_functionidentical protein binding
B0004252molecular_functionserine-type endopeptidase activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005615cellular_componentextracellular space
B0006508biological_processproteolysis
B0006952biological_processdefense response
B0008233molecular_functionpeptidase activity
B0008236molecular_functionserine-type peptidase activity
B0016787molecular_functionhydrolase activity
B0022617biological_processextracellular matrix disassembly
B0031012cellular_componentextracellular matrix
B0042802molecular_functionidentical protein binding
Functional Information from PDB Data
site_idAC1
Number of Residues23
DetailsBINDING SITE FOR RESIDUE 2A4 A 301
ChainResidue
ATHR115
ASO4302
AHOH446
BTHR115
BGLN117
BASP218
BSER219
BCYS220
BSER224
BVAL242
BTRP244
AGLN117
BGLY245
BGLU246
BGLY247
BGLY255
AASP218
ASER219
ACYS220
ASER224
ATRP244
AGLY245
AGLY247

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 302
ChainResidue
AHIS74
AGLN221
AGLY222
ASER224
A2A4301

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MES A 303
ChainResidue
AILE118
AASP207
AASP208
ATYR262
ATYR263
AHOH441

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 301
ChainResidue
BASN214
BTHR215
BARG216

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MES B 302
ChainResidue
ALYS132
BARG203
BARG206
BASP207
BSO4303

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 303
ChainResidue
BHIS186
BARG203
BMES302
BHOH441

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 304
ChainResidue
BHIS74
BGLN221
BGLY222
BSER224

Functional Information from PROSITE/UniProt
site_idPS00134
Number of Residues6
DetailsTRYPSIN_HIS Serine proteases, trypsin family, histidine active site. LTAAHC
ChainResidueDetails
ALEU70-CYS75

site_idPS00135
Number of Residues12
DetailsTRYPSIN_SER Serine proteases, trypsin family, serine active site. DScqGDSGGPLV
ChainResidueDetails
AASP218-VAL229

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Charge relay system
ChainResidueDetails
AHIS74
AASP121
ASER224
BHIS74
BASP121
BSER224

site_idSWS_FT_FI2
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
ALYS132
BLYS132

site_idSWS_FT_FI3
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218
ChainResidueDetails
AASN233
BASN233

237735

PDB entries from 2025-06-18

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