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4LXK

Crystal Structure of Human Beta Secretase in Complex with compound 11d

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
A0016020cellular_componentmembrane
B0004190molecular_functionaspartic-type endopeptidase activity
B0006508biological_processproteolysis
B0016020cellular_componentmembrane
C0004190molecular_functionaspartic-type endopeptidase activity
C0006508biological_processproteolysis
C0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE 1YT A 501
ChainResidue
AGLY11
ATYR71
ATHR72
AGLN73
AGLY74
APHE108
AASP228
AGLY230
ATHR231
ATHR232
AHOH658
AGLN12
AHOH686
AHOH749
AGLY13
ALEU30
AASP32
AGLY34
ASER35
AVAL69
APRO70

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 501
ChainResidue
BARG205
BVAL375
BTHR376

site_idAC3
Number of Residues21
DetailsBINDING SITE FOR RESIDUE 1YT B 502
ChainResidue
BGLN12
BGLY13
BLEU30
BASP32
BGLY34
BSER35
BVAL69
BPRO70
BTYR71
BTHR72
BGLN73
BGLY74
BPHE108
BTYR198
BASP228
BGLY230
BTHR231
BTHR232
BHOH717
BHOH727
BHOH785

site_idAC4
Number of Residues24
DetailsBINDING SITE FOR RESIDUE 1YT C 501
ChainResidue
CGLY11
CGLN12
CGLY13
CLEU30
CASP32
CGLY34
CSER35
CVAL69
CPRO70
CTYR71
CTHR72
CGLN73
CPHE108
CILE110
CTRP115
CILE126
CASP228
CGLY230
CTHR231
CTHR232
CHOH616
CHOH621
CHOH672
CHOH813

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. ILVDTGSSNFAV
ChainResidueDetails
AILE29-VAL40

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsActive site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU10094","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues21
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"17425515","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19011241","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues9
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

239492

PDB entries from 2025-07-30

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