Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4LJ3

Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in complex with substrate c-di-GMP and Ca++

Functional Information from PDB Data
site_idAC1
Number of Residues33
DetailsBINDING SITE FOR RESIDUE C2E A 401
ChainResidue
AGLN127
AASP262
AASP263
ALYS286
AGLU319
AGLY320
AVAL321
AGLU322
AGLY340
ATYR341
APRO346
AGLU141
ACA402
ACA403
AIMD404
AHOH504
AHOH507
AHOH512
AHOH521
AHOH574
AHOH583
AHOH586
ALEU143
AHOH653
AHOH685
AHOH693
AHOH695
AVAL144
AARG145
APRO156
AILE169
ALEU176
AASN200

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 402
ChainResidue
AGLU141
AASN200
AGLU232
AASP262
AC2E401
AHOH505

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 403
ChainResidue
AASP263
AGLU319
AC2E401
AHOH506
AHOH520
AHOH586

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE IMD A 404
ChainResidue
AASN200
AVAL201
AGLU232
ATHR234
AASP262
AC2E401
AHOH588

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE HB0 A 405
ChainResidue
AVAL129
ATHR138
AGLY139
ACYS140
AHIS196
AVAL230
AGLU232
AVAL317
APHE337

site_idAC6
Number of Residues28
DetailsBINDING SITE FOR RESIDUE C2E B 401
ChainResidue
BGLN127
BGLU141
BLEU143
BVAL144
BARG145
BPRO156
BGLU164
BLEU176
BASN200
BASP262
BASP263
BLYS286
BGLU319
BGLY320
BVAL321
BGLU322
BGLY340
BTYR341
BPRO346
BCA402
BCA403
BIMD404
BHOH501
BHOH506
BHOH510
BHOH514
BHOH561
BHOH575

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 402
ChainResidue
BGLU141
BASN200
BGLU232
BASP262
BC2E401
BHOH503

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 403
ChainResidue
BHOH505
BHOH553
BASP263
BASP285
BGLU319
BC2E401

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE IMD B 404
ChainResidue
BASN200
BVAL201
BGLU232
BTHR234
BASP262
BC2E401
BHOH658

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE HB0 B 405
ChainResidue
BVAL129
BTHR138
BGLY139
BHIS196
BVAL230
BGLU232
BVAL317
BPHE337

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:24451384, ECO:0007744|PDB:4LJ3
ChainResidueDetails
AGLN127
BASN200
BASP262
BLYS286
BGLU319
BTYR341
AVAL144
AASN200
AASP262
ALYS286
AGLU319
ATYR341
BGLN127
BVAL144

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:24451384, ECO:0007744|PDB:4LYK
ChainResidueDetails
AGLU141
AGLU232
BGLU141
BGLU232

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon