4LIT

Structure of YcfD a Ribosomal oxygenase from Escherichia coli in complex with Cobalt and 2-oxoglutarate.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005515	molecular_function	protein binding
A	0008198	molecular_function	ferrous iron binding
A	0016706	molecular_function	2-oxoglutarate-dependent dioxygenase activity
A	0042803	molecular_function	protein homodimerization activity
A	0043687	biological_process	post-translational protein modification
A	0046872	molecular_function	metal ion binding
A	0051213	molecular_function	dioxygenase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CO A 501

Chain	Residue
A	HIS159
A	ASP161
A	HIS221
A	AKG502

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site_id	AC2
Number of Residues	10
Details	BINDING SITE FOR RESIDUE AKG A 502

Chain	Residue
A	HIS221
A	CO501
A	HOH613
A	HOH615
A	HOH617
A	MET146
A	SER148
A	HIS159
A	ASP161
A	ARG174

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	3
Details	BINDING: BINDING => ECO:0000305|PubMed:24814345

Chain	Residue	Details
A	SER148
A	ARG174
A	HIS221

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site_id	SWS_FT_FI2
Number of Residues	2
Details	BINDING: BINDING => ECO:0000269|PubMed:24530688

Chain	Residue	Details
A	HIS159
A	ASP161

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