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4LHM

Thymidine phosphorylase from E.coli with 3'-azido-3'-deoxythymidine

Functional Information from GO Data
ChainGOidnamespacecontents
A0004645molecular_function1,4-alpha-oligoglucan phosphorylase activity
A0005829cellular_componentcytosol
A0006206biological_processpyrimidine nucleobase metabolic process
A0006213biological_processpyrimidine nucleoside metabolic process
A0006974biological_processDNA damage response
A0009032molecular_functionthymidine phosphorylase activity
A0016020cellular_componentmembrane
A0016154molecular_functionpyrimidine-nucleoside phosphorylase activity
A0016757molecular_functionglycosyltransferase activity
A0016763molecular_functionpentosyltransferase activity
A0046104biological_processthymidine metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 A 501
ChainResidue
ALYS84
AHOH790
AHOH1033
ASER86
ASER95
ASER113
ATHR123
AHOH628
AHOH655
AHOH660
AHOH668

site_idAC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 A 502
ChainResidue
AGLN5
AARG9
AARG12
AALA175
ATHR176
AVAL177
AASP178
AHOH666
AHOH707
AHOH1039
AHOH1042

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 A 503
ChainResidue
AARG257
AMET338
ATHR340
AHIS403
AASP406
AGLU407
AASN408
AHOH726
AHOH816
AHOH1057

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 504
ChainResidue
AHIS15
AALA16
AHOH1021

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 505
ChainResidue
AARG234
ALYS288
AHOH879
AHOH1075

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 506
ChainResidue
AGLN372
AALA373
AHOH812

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 507
ChainResidue
AARG437
ASER439
AHOH760

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 508
ChainResidue
AARG268
APHE273
AHOH723
AHOH727
AHOH859

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 509
ChainResidue
APHE2
ALEU3
AALA4
AGLN5
AGLN38
AHOH1031

site_idBC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE AZZ A 510
ChainResidue
ATHR87
ATYR168
AARG171
AVAL177
ASER186
ALYS190
APHE210
AMET211
ALEU220
AHOH1023
AHOH1028
AHOH1086

Functional Information from PROSITE/UniProt
site_idPS00647
Number of Residues16
DetailsTHYMID_PHOSPHORYLASE Thymidine and pyrimidine-nucleoside phosphorylases signature. SGRGLghTGGTlDkLE
ChainResidueDetails
ASER113-GLU128

Catalytic Information from CSA
site_idMCSA1
Number of Residues9
DetailsM-CSA 413
ChainResidueDetails
AASP83proton shuttle (general acid/base)
ALYS84activator, electrostatic stabiliser
AHIS85electrostatic stabiliser
ASER86electrostatic stabiliser
ATHR123electrostatic stabiliser
AARG171electrostatic stabiliser
ASER186electrostatic stabiliser
ALYS190electrostatic stabiliser, proton shuttle (general acid/base)
ALYS191electrostatic stabiliser

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PDB entries from 2024-06-12

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