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4L3T

Crystal Structure of Substrate-free Human Presequence Protease

Functional Information from GO Data
ChainGOidnamespacecontents
A0004222molecular_functionmetalloendopeptidase activity
A0005739cellular_componentmitochondrion
A0005759cellular_componentmitochondrial matrix
A0006508biological_processproteolysis
A0006626biological_processprotein targeting to mitochondrion
A0008047molecular_functionenzyme activator activity
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0016485biological_processprotein processing
A0046872molecular_functionmetal ion binding
B0004222molecular_functionmetalloendopeptidase activity
B0005739cellular_componentmitochondrion
B0005759cellular_componentmitochondrial matrix
B0006508biological_processproteolysis
B0006626biological_processprotein targeting to mitochondrion
B0008047molecular_functionenzyme activator activity
B0008237molecular_functionmetallopeptidase activity
B0008270molecular_functionzinc ion binding
B0016485biological_processprotein processing
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1101
ChainResidue
AHIS104
AHIS108
AGLU205
AACT1108

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1102
ChainResidue
ASER453
AGOL1103
AHOH1208
AHOH1242
AGLY382
ATYR383
ASER449
ATYR450
AALA452

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1103
ChainResidue
ATYR380
AGLY382
AGOL1102
AHOH1208
AHOH1404
AHOH1555

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 1104
ChainResidue
AGLU214
AASP373
AVAL378
AHOH1675

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 1105
ChainResidue
APHE210
AHIS220
ATYR510
AHOH1711

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 1106
ChainResidue
ACYS34
ALEU62

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1107
ChainResidue
AARG36
ATYR40
AHIS78
AALA80
AGLY269
AASN270
APHE271
APRO272
ALEU273

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE ACT A 1108
ChainResidue
AHIS104
AGLN107
AHIS108
AASN136
AALA137
AGLU205
ATYR906
AZN1101
AHOH1544

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 1101
ChainResidue
BHIS104
BHIS108
BGLU205
BACT1108

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 1102
ChainResidue
AGLN682
AGLU686
AHOH1593
AHOH1594
BLEU629
BASP631
BGLU634
BHOH1534

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 1103
ChainResidue
BGLY382
BTYR383
BSER449
BTYR450
BALA452
BSER453
BGOL1104
BHOH1489

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1104
ChainResidue
BGLY382
BGOL1103
BHOH1324
BHOH1482
BHOH1485
BHOH1672

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT B 1105
ChainResidue
AMLY794
BASN358
BASP423

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT B 1106
ChainResidue
BSER56
BLEU62
BTHR63

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT B 1107
ChainResidue
BPHE210
BHIS220
BASP238
BTYR510

site_idBC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE ACT B 1108
ChainResidue
BHIS104
BGLN107
BHIS108
BALA137
BGLU205
BTYR906
BZN1101
BHOH1525
BHOH1528

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT B 1109
ChainResidue
BARG81
BASP83
BSER440

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT B 1110
ChainResidue
BHOH1564
ALEU629
AGLU634
BASN690
BHOH1563

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT B 1111
ChainResidue
BPRO926
BTHR928
BILE929
BGLU930

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 1112
ChainResidue
BHIS281
BARG307
BHOH1398
BHOH1623

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT B 1113
ChainResidue
AGLN252
ATHR256
BGLU527

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT B 1114
ChainResidue
BGLU214
BASP373
BPHE374
BVAL378

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000269|PubMed:16849325, ECO:0000269|PubMed:24931469
ChainResidueDetails
BGLN107

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: ACT_SITE => ECO:0000250|UniProtKB:Q9LJL3
ChainResidueDetails
BGLU180

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:24931469, ECO:0007744|PDB:4L3T, ECO:0007744|PDB:4NGE
ChainResidueDetails
BGLU205
BHIS108
BHIS104

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q8K411
ChainResidueDetails
BMLZ884
BMLZ759

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q8K411
ChainResidueDetails
BLYS770

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:Q8K411
ChainResidueDetails
BLYS849
BMLY946

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PDB entries from 2024-06-12

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