4KXY
Human transketolase in complex with ThDP analogue (R)-2-(1,2-dihydroxyethyl)-3-deaza-ThDP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0004802 | molecular_function | transketolase activity |
A | 0005509 | molecular_function | calcium ion binding |
A | 0005515 | molecular_function | protein binding |
A | 0005654 | cellular_component | nucleoplasm |
A | 0005737 | cellular_component | cytoplasm |
A | 0005777 | cellular_component | peroxisome |
A | 0005789 | cellular_component | endoplasmic reticulum membrane |
A | 0005829 | cellular_component | cytosol |
A | 0006098 | biological_process | pentose-phosphate shunt |
A | 0009052 | biological_process | pentose-phosphate shunt, non-oxidative branch |
A | 0016604 | cellular_component | nuclear body |
A | 0016740 | molecular_function | transferase activity |
A | 0030976 | molecular_function | thiamine pyrophosphate binding |
A | 0031982 | cellular_component | vesicle |
A | 0040008 | biological_process | regulation of growth |
A | 0042803 | molecular_function | protein homodimerization activity |
A | 0046166 | biological_process | glyceraldehyde-3-phosphate biosynthetic process |
A | 0046872 | molecular_function | metal ion binding |
A | 0070062 | cellular_component | extracellular exosome |
A | 1901159 | biological_process | xylulose 5-phosphate biosynthetic process |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0004802 | molecular_function | transketolase activity |
B | 0005509 | molecular_function | calcium ion binding |
B | 0005515 | molecular_function | protein binding |
B | 0005654 | cellular_component | nucleoplasm |
B | 0005737 | cellular_component | cytoplasm |
B | 0005777 | cellular_component | peroxisome |
B | 0005789 | cellular_component | endoplasmic reticulum membrane |
B | 0005829 | cellular_component | cytosol |
B | 0006098 | biological_process | pentose-phosphate shunt |
B | 0009052 | biological_process | pentose-phosphate shunt, non-oxidative branch |
B | 0016604 | cellular_component | nuclear body |
B | 0016740 | molecular_function | transferase activity |
B | 0030976 | molecular_function | thiamine pyrophosphate binding |
B | 0031982 | cellular_component | vesicle |
B | 0040008 | biological_process | regulation of growth |
B | 0042803 | molecular_function | protein homodimerization activity |
B | 0046166 | biological_process | glyceraldehyde-3-phosphate biosynthetic process |
B | 0046872 | molecular_function | metal ion binding |
B | 0070062 | cellular_component | extracellular exosome |
B | 1901159 | biological_process | xylulose 5-phosphate biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO A 701 |
Chain | Residue |
A | GLU423 |
A | LYS597 |
A | HOH8169 |
A | HOH8187 |
B | ALA33 |
B | ARG101 |
B | LYS102 |
B | HOH1549 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 702 |
Chain | Residue |
A | ALA84 |
A | GLU88 |
A | GLU94 |
A | LEU97 |
A | HOH8490 |
A | HOH8519 |
A | ARG21 |
site_id | AC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO A 703 |
Chain | Residue |
A | PHE71 |
A | VAL72 |
A | LEU73 |
A | LEU82 |
A | PHE117 |
A | THR118 |
A | HOH8072 |
A | HOH8088 |
A | HOH8130 |
site_id | AC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 704 |
Chain | Residue |
A | TYR564 |
A | ALA588 |
A | ASN590 |
A | HOH8071 |
A | HOH8079 |
A | HOH8137 |
A | HOH8638 |
site_id | AC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 705 |
Chain | Residue |
A | GLN189 |
A | SER256 |
A | TRP257 |
A | HIS258 |
A | HOH8056 |
A | HOH8357 |
B | ASN344 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 706 |
Chain | Residue |
A | PRO63 |
A | ASN68 |
A | ASP69 |
A | ARG70 |
A | PHE71 |
A | ARG379 |
A | HOH8241 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA A 707 |
Chain | Residue |
A | ASP155 |
A | ASN185 |
A | LEU187 |
A | 1U0709 |
A | HOH8484 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA A 708 |
Chain | Residue |
A | ASN411 |
A | ALA461 |
A | THR464 |
A | CYS468 |
A | HOH8041 |
A | HOH8042 |
site_id | AC9 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE 1U0 A 709 |
Chain | Residue |
A | HIS37 |
A | SER40 |
A | LYS75 |
A | HIS77 |
A | HIS110 |
A | GLY123 |
A | SER124 |
A | LEU125 |
A | GLY154 |
A | ASP155 |
A | GLY156 |
A | GLU157 |
A | GLU160 |
A | ASN185 |
A | LEU187 |
A | GLN189 |
A | LYS244 |
A | HIS258 |
A | CA707 |
A | HOH8053 |
A | HOH8484 |
A | HOH8571 |
B | ILE364 |
B | GLU366 |
B | PHE392 |
B | ARG395 |
B | ASP424 |
B | GLN428 |
B | HOH1328 |
site_id | BC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO A 710 |
Chain | Residue |
A | GLU165 |
A | PHE169 |
A | CYS362 |
A | ASN368 |
A | HOH8281 |
A | HOH8553 |
B | SER159 |
B | EDO1008 |
site_id | BC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO A 711 |
Chain | Residue |
A | GLN10 |
A | HOH8273 |
site_id | BC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 712 |
Chain | Residue |
A | HOH8486 |
A | HOH8688 |
A | TYR137 |
A | TYR141 |
A | TYR173 |
A | HOH8383 |
site_id | BC4 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO A 713 |
Chain | Residue |
A | LEU158 |
A | SER159 |
A | TRP164 |
A | HOH8238 |
A | HOH8437 |
B | TRP164 |
B | GLU165 |
B | PHE209 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 714 |
Chain | Residue |
A | LEU92 |
A | LEU107 |
A | GLN115 |
A | HOH8082 |
A | HOH8134 |
A | HOH8183 |
site_id | BC6 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO A 715 |
Chain | Residue |
A | PRO475 |
A | ASN477 |
A | VAL510 |
A | GLU514 |
A | PRO598 |
A | LEU602 |
A | HOH8109 |
A | HOH8340 |
site_id | BC7 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 A 716 |
Chain | Residue |
A | ARG318 |
A | SER345 |
A | HIS416 |
A | ARG474 |
A | HOH8126 |
A | HOH8284 |
A | HOH8365 |
A | HOH8659 |
site_id | BC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 717 |
Chain | Residue |
A | GLN127 |
A | ALA131 |
A | SER371 |
A | VAL374 |
A | GLN399 |
A | ALA403 |
A | HOH8112 |
site_id | BC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A 718 |
Chain | Residue |
A | ASP333 |
A | ARG358 |
A | HOH8602 |
site_id | CC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO B 1001 |
Chain | Residue |
B | ARG21 |
B | ALA84 |
B | GLU88 |
B | GLU94 |
B | LEU97 |
B | LYS283 |
B | HOH1514 |
B | HOH1615 |
site_id | CC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B 1002 |
Chain | Residue |
B | TYR564 |
B | ALA588 |
B | ASN590 |
B | HOH1142 |
B | HOH1169 |
B | HOH1429 |
B | HOH1454 |
site_id | CC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B 1003 |
Chain | Residue |
B | PRO63 |
B | ASN68 |
B | ASP69 |
B | ARG70 |
B | PHE71 |
B | ARG379 |
B | HOH1705 |
site_id | CC4 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO B 1004 |
Chain | Residue |
B | PHE71 |
B | VAL72 |
B | LEU73 |
B | LEU82 |
B | PHE117 |
B | THR118 |
B | HOH1150 |
B | HOH1160 |
B | HOH1215 |
site_id | CC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B 1005 |
Chain | Residue |
A | ASN344 |
B | GLN189 |
B | SER256 |
B | TRP257 |
B | HIS258 |
B | HOH1153 |
B | HOH1374 |
site_id | CC6 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE 1U0 B 1006 |
Chain | Residue |
A | ASP341 |
A | ILE364 |
A | GLU366 |
A | PHE392 |
A | ARG395 |
A | ASP424 |
A | GLN428 |
B | HIS37 |
B | SER40 |
B | LYS75 |
B | HIS77 |
B | HIS110 |
B | GLY123 |
B | SER124 |
B | LEU125 |
B | GLY154 |
B | ASP155 |
B | GLY156 |
B | GLU157 |
B | GLU160 |
B | ASN185 |
B | LEU187 |
B | GLN189 |
B | LYS244 |
B | HIS258 |
B | CA1007 |
B | HOH1101 |
B | HOH1122 |
B | HOH1320 |
B | HOH1334 |
site_id | CC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA B 1007 |
Chain | Residue |
B | ASP155 |
B | ASN185 |
B | LEU187 |
B | 1U01006 |
B | HOH1101 |
site_id | CC8 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO B 1008 |
Chain | Residue |
A | TRP164 |
A | GLU165 |
A | PHE209 |
A | EDO710 |
B | LEU158 |
B | SER159 |
B | TRP164 |
B | EDO1009 |
site_id | CC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 1009 |
Chain | Residue |
B | LEU158 |
B | TRP164 |
B | ARG205 |
B | EDO1008 |
B | HOH1172 |
B | HOH1202 |
site_id | DC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO B 1010 |
Chain | Residue |
B | GLN10 |
B | HOH1426 |
site_id | DC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO B 1011 |
Chain | Residue |
A | ALA33 |
A | ARG101 |
A | LYS102 |
A | HOH8546 |
B | GLU423 |
B | LYS597 |
B | HOH1354 |
B | HOH1455 |
site_id | DC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 1012 |
Chain | Residue |
B | LEU92 |
B | LEU107 |
B | GLN115 |
B | HOH1176 |
B | HOH1189 |
B | HOH1228 |
site_id | DC4 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 B 1013 |
Chain | Residue |
A | HOH8624 |
B | ARG318 |
B | SER345 |
B | HIS416 |
B | ARG474 |
B | HOH1208 |
B | HOH1299 |
B | HOH1720 |
B | HOH1724 |
site_id | DC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA B 1014 |
Chain | Residue |
B | ASN411 |
B | ALA461 |
B | THR464 |
B | CYS468 |
B | HOH1131 |
B | HOH1166 |
site_id | DC6 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE EDO B 1015 |
Chain | Residue |
A | PRO441 |
A | LYS538 |
A | HOH8347 |
A | HOH8652 |
B | TYR563 |
B | TYR564 |
B | GLU565 |
B | VAL589 |
B | ASN590 |
B | HOH1295 |
B | HOH1381 |
site_id | DC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO B 1016 |
Chain | Residue |
B | GLN127 |
B | ALA131 |
B | SER371 |
B | HOH1240 |
site_id | DC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 1017 |
Chain | Residue |
B | TYR137 |
B | TYR141 |
B | TYR173 |
B | HOH1421 |
B | HOH1589 |
B | HOH1680 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton donor => ECO:0000250 |
Chain | Residue | Details |
A | GLU366 | |
B | GLU366 |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
A | HIS37 | |
B | HIS416 | |
B | ASP424 | |
B | ARG474 | |
A | ARG318 | |
A | SER345 | |
A | HIS416 | |
A | ASP424 | |
A | ARG474 | |
B | HIS37 | |
B | ARG318 | |
B | SER345 |
site_id | SWS_FT_FI3 |
Number of Residues | 22 |
Details | BINDING: |
Chain | Residue | Details |
A | SER40 | |
A | PHE392 | |
A | GLN428 | |
B | SER40 | |
B | HIS77 | |
B | GLY123 | |
B | ASP155 | |
B | GLY156 | |
B | ASN185 | |
B | LEU187 | |
B | LYS244 | |
A | HIS77 | |
B | HIS258 | |
B | PHE392 | |
B | GLN428 | |
A | GLY123 | |
A | ASP155 | |
A | GLY156 | |
A | ASN185 | |
A | LEU187 | |
A | LYS244 | |
A | HIS258 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | SITE: Important for catalytic activity => ECO:0000250 |
Chain | Residue | Details |
A | HIS37 | |
A | HIS258 | |
B | HIS37 | |
B | HIS258 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22814378 |
Chain | Residue | Details |
A | MET1 | |
B | MET1 |
site_id | SWS_FT_FI6 |
Number of Residues | 4 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | SER3 | |
A | SER104 | |
B | SER3 | |
B | SER104 |
site_id | SWS_FT_FI7 |
Number of Residues | 14 |
Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | LYS6 | |
B | LYS144 | |
B | LYS204 | |
B | LYS241 | |
B | LYS260 | |
B | LYS603 | |
A | LYS11 | |
A | LYS144 | |
A | LYS204 | |
A | LYS241 | |
A | LYS260 | |
A | LYS603 | |
B | LYS6 | |
B | LYS11 |
site_id | SWS_FT_FI8 |
Number of Residues | 4 |
Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P40142 |
Chain | Residue | Details |
A | LYS232 | |
A | LYS538 | |
B | LYS232 | |
B | LYS538 |
site_id | SWS_FT_FI9 |
Number of Residues | 2 |
Details | MOD_RES: Phosphotyrosine => ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231 |
Chain | Residue | Details |
A | TYR275 | |
B | TYR275 |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | MOD_RES: Phosphothreonine => ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | THR287 | |
B | THR287 |
site_id | SWS_FT_FI11 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | SER295 | |
B | SER295 |
site_id | SWS_FT_FI12 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P50137 |
Chain | Residue | Details |
A | SER345 | |
B | SER345 |
site_id | SWS_FT_FI13 |
Number of Residues | 4 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733 |
Chain | Residue | Details |
A | LYS352 | |
B | LYS352 |