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4KXM

Crystal structure of DNPH1 (RCL) WITH N6-ISOPENTENYL-AMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0009159biological_processdeoxyribonucleoside monophosphate catabolic process
A0070694molecular_functiondeoxyribonucleoside 5'-monophosphate N-glycosidase activity
B0009159biological_processdeoxyribonucleoside monophosphate catabolic process
B0070694molecular_functiondeoxyribonucleoside 5'-monophosphate N-glycosidase activity
C0009159biological_processdeoxyribonucleoside monophosphate catabolic process
C0070694molecular_functiondeoxyribonucleoside 5'-monophosphate N-glycosidase activity
D0009159biological_processdeoxyribonucleoside monophosphate catabolic process
D0070694molecular_functiondeoxyribonucleoside 5'-monophosphate N-glycosidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE 6IA A 201
ChainResidue
ACYS15
AASN69
ASER87
AGLY89
AGLU93
AHOH439
AHOH440
BSER117
BMET119
CTYR150
AGLY16
ASER17
AILE18
AARG19
AGLY20
AHIS45
AVAL46
AILE65

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 6IA B 201
ChainResidue
ASER117
AMET119
BCYS15
BGLY16
BSER17
BILE18
BARG19
BGLY20
BHIS45
BVAL46
BILE65
BASN69
BSER87
BGLY89
BGLU93
BHOH315
BHOH317

site_idAC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE 6IA C 201
ChainResidue
CTYR13
CCYS15
CGLY16
CSER17
CILE18
CARG19
CGLY20
CHIS45
CVAL46
CILE65
CASN69
CSER87
CGLY89
CGLU93
CHOH303
CHOH309
DSER117
DALA118
DMET119

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 6IA D 201
ChainResidue
BTYR150
CSER117
CMET119
DTYR13
DCYS15
DGLY16
DSER17
DILE18
DARG19
DGLY20
DILE65
DASN69
DSER87
DGLY89
DGLU93
DHOH309
DHOH311

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues28
DetailsBINDING: BINDING => ECO:0000269|PubMed:23385460, ECO:0000269|PubMed:24260472, ECO:0000269|PubMed:25108359, ECO:0007744|PDB:4FYH, ECO:0007744|PDB:4FYI, ECO:0007744|PDB:4FYK, ECO:0007744|PDB:4KXL, ECO:0007744|PDB:4KXM, ECO:0007744|PDB:4KXN, ECO:0007744|PDB:4P5D
ChainResidueDetails
AGLY16
BARG19
BGLY20
BSER87
BGLY89
BGLU93
CGLY16
CILE18
CARG19
CGLY20
CSER87
AILE18
CGLY89
CGLU93
DGLY16
DILE18
DARG19
DGLY20
DSER87
DGLY89
DGLU93
AARG19
AGLY20
ASER87
AGLY89
AGLU93
BGLY16
BILE18

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: in other chain => ECO:0000269|PubMed:23385460, ECO:0000269|PubMed:24260472, ECO:0000269|PubMed:25108359, ECO:0007744|PDB:4FYH, ECO:0007744|PDB:4FYI, ECO:0007744|PDB:4FYK, ECO:0007744|PDB:4KXL, ECO:0007744|PDB:4KXM, ECO:0007744|PDB:4KXN, ECO:0007744|PDB:4P5D
ChainResidueDetails
ASER117
BSER117
CSER117
DSER117

site_idSWS_FT_FI3
Number of Residues16
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:O43598
ChainResidueDetails
ASER17
CSER87
CSER112
CSER127
DSER17
DSER87
DSER112
DSER127
ASER87
ASER112
ASER127
BSER17
BSER87
BSER112
BSER127
CSER17

site_idSWS_FT_FI4
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:22673903
ChainResidueDetails
ASER117
BSER117
CSER117
DSER117

222036

PDB entries from 2024-07-03

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