4KXL
Crystal structure of DNPH1 (RCL) with 6-CYCLOPENTYL-AMP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0009159 | biological_process | deoxyribonucleoside monophosphate catabolic process |
| A | 0070694 | molecular_function | deoxyribonucleoside 5'-monophosphate N-glycosidase activity |
| B | 0009159 | biological_process | deoxyribonucleoside monophosphate catabolic process |
| B | 0070694 | molecular_function | deoxyribonucleoside 5'-monophosphate N-glycosidase activity |
| C | 0009159 | biological_process | deoxyribonucleoside monophosphate catabolic process |
| C | 0070694 | molecular_function | deoxyribonucleoside 5'-monophosphate N-glycosidase activity |
| D | 0009159 | biological_process | deoxyribonucleoside monophosphate catabolic process |
| D | 0070694 | molecular_function | deoxyribonucleoside 5'-monophosphate N-glycosidase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE 6C6 A 201 |
| Chain | Residue |
| A | CYS15 |
| A | ILE65 |
| A | ASN69 |
| A | SER87 |
| A | GLY89 |
| A | GLU93 |
| A | HOH304 |
| A | HOH305 |
| A | HOH322 |
| B | SER117 |
| B | MET119 |
| A | GLY16 |
| A | SER17 |
| A | ILE18 |
| A | ARG19 |
| A | GLY20 |
| A | HIS45 |
| A | VAL46 |
| A | GLU57 |
| site_id | AC2 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE 6C6 B 201 |
| Chain | Residue |
| A | SER117 |
| A | MET119 |
| B | CYS15 |
| B | GLY16 |
| B | SER17 |
| B | ILE18 |
| B | ARG19 |
| B | GLY20 |
| B | ILE65 |
| B | ASN69 |
| B | SER87 |
| B | GLY89 |
| B | VAL90 |
| B | GLU93 |
| B | HOH304 |
| B | HOH322 |
| B | HOH359 |
| site_id | AC3 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE 6C6 C 201 |
| Chain | Residue |
| C | CYS15 |
| C | GLY16 |
| C | SER17 |
| C | ILE18 |
| C | ARG19 |
| C | GLY20 |
| C | HIS45 |
| C | VAL46 |
| C | ILE65 |
| C | ASN69 |
| C | SER87 |
| C | GLY89 |
| C | GLU93 |
| C | HOH307 |
| C | HOH310 |
| C | HOH335 |
| C | HOH371 |
| D | SER117 |
| D | MET119 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 C 202 |
| Chain | Residue |
| C | ARG34 |
| C | ARG37 |
| site_id | AC5 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE 6C6 D 201 |
| Chain | Residue |
| C | SER117 |
| C | MET119 |
| D | CYS15 |
| D | GLY16 |
| D | SER17 |
| D | ILE18 |
| D | ARG19 |
| D | GLY20 |
| D | HIS45 |
| D | VAL46 |
| D | GLU57 |
| D | ILE65 |
| D | ASN69 |
| D | SER87 |
| D | GLY89 |
| D | GLU93 |
| D | HOH301 |
| D | HOH304 |
| D | HOH338 |
| D | HOH403 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 D 202 |
| Chain | Residue |
| D | ARG34 |
| D | ARG37 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 28 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:23385460, ECO:0000269|PubMed:24260472, ECO:0000269|PubMed:25108359, ECO:0007744|PDB:4FYH, ECO:0007744|PDB:4FYI, ECO:0007744|PDB:4FYK, ECO:0007744|PDB:4KXL, ECO:0007744|PDB:4KXM, ECO:0007744|PDB:4KXN, ECO:0007744|PDB:4P5D |
| Chain | Residue | Details |
| A | GLY16 | |
| B | ARG19 | |
| B | GLY20 | |
| B | SER87 | |
| B | GLY89 | |
| B | GLU93 | |
| C | GLY16 | |
| C | ILE18 | |
| C | ARG19 | |
| C | GLY20 | |
| C | SER87 | |
| A | ILE18 | |
| C | GLY89 | |
| C | GLU93 | |
| D | GLY16 | |
| D | ILE18 | |
| D | ARG19 | |
| D | GLY20 | |
| D | SER87 | |
| D | GLY89 | |
| D | GLU93 | |
| A | ARG19 | |
| A | GLY20 | |
| A | SER87 | |
| A | GLY89 | |
| A | GLU93 | |
| B | GLY16 | |
| B | ILE18 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | BINDING: in other chain => ECO:0000269|PubMed:23385460, ECO:0000269|PubMed:24260472, ECO:0000269|PubMed:25108359, ECO:0007744|PDB:4FYH, ECO:0007744|PDB:4FYI, ECO:0007744|PDB:4FYK, ECO:0007744|PDB:4KXL, ECO:0007744|PDB:4KXM, ECO:0007744|PDB:4KXN, ECO:0007744|PDB:4P5D |
| Chain | Residue | Details |
| A | SER117 | |
| B | SER117 | |
| C | SER117 | |
| D | SER117 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 16 |
| Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:O43598 |
| Chain | Residue | Details |
| A | SER17 | |
| C | SER87 | |
| C | SER112 | |
| C | SER127 | |
| D | SER17 | |
| D | SER87 | |
| D | SER112 | |
| D | SER127 | |
| A | SER87 | |
| A | SER112 | |
| A | SER127 | |
| B | SER17 | |
| B | SER87 | |
| B | SER112 | |
| B | SER127 | |
| C | SER17 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:22673903 |
| Chain | Residue | Details |
| A | SER117 | |
| B | SER117 | |
| C | SER117 | |
| D | SER117 |
