4KXL

Crystal structure of DNPH1 (RCL) with 6-CYCLOPENTYL-AMP

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0009159	biological_process	deoxyribonucleoside monophosphate catabolic process
A	0070694	molecular_function	5-hydroxymethyl-dUMP N-hydrolase activity
B	0009159	biological_process	deoxyribonucleoside monophosphate catabolic process
B	0070694	molecular_function	5-hydroxymethyl-dUMP N-hydrolase activity
C	0009159	biological_process	deoxyribonucleoside monophosphate catabolic process
C	0070694	molecular_function	5-hydroxymethyl-dUMP N-hydrolase activity
D	0009159	biological_process	deoxyribonucleoside monophosphate catabolic process
D	0070694	molecular_function	5-hydroxymethyl-dUMP N-hydrolase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	19
Details	BINDING SITE FOR RESIDUE 6C6 A 201

Chain	Residue
A	CYS15
A	ILE65
A	ASN69
A	SER87
A	GLY89
A	GLU93
A	HOH304
A	HOH305
A	HOH322
B	SER117
B	MET119
A	GLY16
A	SER17
A	ILE18
A	ARG19
A	GLY20
A	HIS45
A	VAL46
A	GLU57

---

site_id	AC2
Number of Residues	17
Details	BINDING SITE FOR RESIDUE 6C6 B 201

Chain	Residue
A	SER117
A	MET119
B	CYS15
B	GLY16
B	SER17
B	ILE18
B	ARG19
B	GLY20
B	ILE65
B	ASN69
B	SER87
B	GLY89
B	VAL90
B	GLU93
B	HOH304
B	HOH322
B	HOH359

---

site_id	AC3
Number of Residues	19
Details	BINDING SITE FOR RESIDUE 6C6 C 201

Chain	Residue
C	CYS15
C	GLY16
C	SER17
C	ILE18
C	ARG19
C	GLY20
C	HIS45
C	VAL46
C	ILE65
C	ASN69
C	SER87
C	GLY89
C	GLU93
C	HOH307
C	HOH310
C	HOH335
C	HOH371
D	SER117
D	MET119

---

site_id	AC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 C 202

Chain	Residue
C	ARG34
C	ARG37

---

site_id	AC5
Number of Residues	20
Details	BINDING SITE FOR RESIDUE 6C6 D 201

Chain	Residue
C	SER117
C	MET119
D	CYS15
D	GLY16
D	SER17
D	ILE18
D	ARG19
D	GLY20
D	HIS45
D	VAL46
D	GLU57
D	ILE65
D	ASN69
D	SER87
D	GLY89
D	GLU93
D	HOH301
D	HOH304
D	HOH338
D	HOH403

---

site_id	AC6
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 D 202

Chain	Residue
D	ARG34
D	ARG37

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	28
Details	Binding site: {"evidences":[{"source":"PubMed","id":"23385460","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24260472","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25108359","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4FYH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FYI","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FYK","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4KXL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4KXM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4KXN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4P5D","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	4
Details	Binding site: {"description":"in other chain","evidences":[{"source":"PubMed","id":"23385460","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24260472","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25108359","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4FYH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FYI","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FYK","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4KXL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4KXM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4KXN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4P5D","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	16
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"O43598","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"22673903","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---