Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003677 | molecular_function | DNA binding |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0006281 | biological_process | DNA repair |
A | 0016779 | molecular_function | nucleotidyltransferase activity |
A | 0034061 | molecular_function | DNA polymerase activity |
E | 0003677 | molecular_function | DNA binding |
E | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
E | 0006281 | biological_process | DNA repair |
E | 0016779 | molecular_function | nucleotidyltransferase activity |
E | 0034061 | molecular_function | DNA polymerase activity |
I | 0003677 | molecular_function | DNA binding |
I | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
I | 0006281 | biological_process | DNA repair |
I | 0016779 | molecular_function | nucleotidyltransferase activity |
I | 0034061 | molecular_function | DNA polymerase activity |
M | 0003677 | molecular_function | DNA binding |
M | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
M | 0006281 | biological_process | DNA repair |
M | 0016779 | molecular_function | nucleotidyltransferase activity |
M | 0034061 | molecular_function | DNA polymerase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE 1RY A 601 |
Chain | Residue |
A | ARG386 |
A | PHE506 |
A | ALA510 |
A | ASN513 |
A | CA605 |
A | CA606 |
A | HOH702 |
A | HOH717 |
A | HOH720 |
A | HOH736 |
A | HOH773 |
A | GLY416 |
A | HOH786 |
B | DG5 |
C | DC6 |
A | SER417 |
A | ARG420 |
A | CYS425 |
A | GLY426 |
A | ASP427 |
A | ASP429 |
A | TYR505 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 602 |
Chain | Residue |
A | SER339 |
A | ILE341 |
A | ALA344 |
A | HOH828 |
C | DA5 |
C | HOH103 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 603 |
Chain | Residue |
A | CYS300 |
A | ILE302 |
A | ILE305 |
A | HOH822 |
D | DC3 |
M | LYS307 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 604 |
Chain | Residue |
A | SER463 |
A | HOH757 |
A | HOH777 |
A | HOH796 |
A | HOH827 |
B | DT10 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA A 605 |
Chain | Residue |
A | ASP427 |
A | ASP429 |
A | 1RY601 |
A | HOH702 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA A 606 |
Chain | Residue |
A | ASP427 |
A | ASP429 |
A | ASP490 |
A | 1RY601 |
C | DC6 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CA A 607 |
Chain | Residue |
A | GLU396 |
A | GLN400 |
A | CYS412 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ACT A 608 |
Chain | Residue |
A | LEU503 |
A | THR555 |
A | GLU556 |
A | HOH794 |
A | HOH799 |
site_id | AC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CA B 101 |
Chain | Residue |
B | HOH212 |
B | HOH213 |
B | HOH220 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ACT B 102 |
site_id | BC2 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE 1RY E 601 |
Chain | Residue |
E | ARG386 |
E | GLY416 |
E | SER417 |
E | ARG420 |
E | CYS425 |
E | GLY426 |
E | ASP427 |
E | ASP429 |
E | TYR505 |
E | PHE506 |
E | ASN513 |
E | CA602 |
E | CA603 |
E | HOH733 |
E | HOH752 |
E | HOH753 |
E | HOH754 |
E | HOH761 |
E | HOH778 |
F | DG5 |
G | DC6 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA E 602 |
Chain | Residue |
E | ASP427 |
E | ASP429 |
E | 1RY601 |
E | HOH752 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA E 603 |
Chain | Residue |
E | ASP427 |
E | ASP429 |
E | ASP490 |
E | 1RY601 |
site_id | BC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CA E 604 |
Chain | Residue |
E | HOH754 |
E | HOH778 |
site_id | BC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA E 605 |
Chain | Residue |
G | HOH101 |
E | SER339 |
E | ILE341 |
E | ALA344 |
E | HOH726 |
G | DA5 |
site_id | BC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA E 606 |
Chain | Residue |
E | GLU396 |
E | GLN400 |
E | CYS412 |
E | HOH771 |
site_id | BC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CAC E 607 |
Chain | Residue |
E | SER463 |
E | GLU465 |
E | HOH763 |
F | HOH209 |
I | ARG441 |
site_id | BC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ACT E 608 |
Chain | Residue |
E | THR555 |
E | GLU556 |
E | HOH777 |
site_id | CC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA F 101 |
Chain | Residue |
F | HOH203 |
F | HOH205 |
F | HOH206 |
F | HOH207 |
site_id | CC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ACT F 102 |
site_id | CC3 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE 1RY I 601 |
Chain | Residue |
I | ARG386 |
I | GLY416 |
I | SER417 |
I | ARG420 |
I | GLY426 |
I | ASP427 |
I | TYR505 |
I | SER509 |
I | ALA510 |
I | ASN513 |
I | ARG514 |
I | ARG517 |
I | CA604 |
I | HOH752 |
I | HOH763 |
I | HOH767 |
J | DG5 |
K | DC6 |
site_id | CC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA I 602 |
Chain | Residue |
I | SER339 |
I | ILE341 |
I | ALA344 |
I | HOH714 |
K | DA5 |
K | HOH201 |
site_id | CC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA I 603 |
Chain | Residue |
I | ASP427 |
I | ASP429 |
I | CA604 |
I | HOH751 |
I | HOH752 |
I | HOH756 |
site_id | CC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA I 604 |
Chain | Residue |
I | ASP427 |
I | 1RY601 |
I | CA603 |
I | HOH724 |
I | HOH752 |
site_id | CC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ACT I 605 |
Chain | Residue |
I | THR555 |
I | GLU556 |
site_id | CC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CA J 101 |
site_id | CC9 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CA K 101 |
site_id | DC1 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE 1RY M 601 |
Chain | Residue |
M | ARG386 |
M | GLY416 |
M | SER417 |
M | ARG420 |
M | GLY426 |
M | TYR505 |
M | SER509 |
M | ALA510 |
M | ASN513 |
M | ARG517 |
M | CA605 |
M | HOH786 |
M | HOH801 |
M | HOH802 |
N | DG5 |
O | DC6 |
site_id | DC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA M 602 |
Chain | Residue |
M | CYS300 |
M | ILE302 |
M | PRO303 |
M | ILE305 |
P | DC3 |
site_id | DC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA M 603 |
Chain | Residue |
M | SER339 |
M | ILE341 |
M | ALA344 |
O | DA5 |
O | HOH101 |
site_id | DC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA M 604 |
Chain | Residue |
M | ASP427 |
M | ASP429 |
M | CA605 |
M | HOH787 |
site_id | DC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA M 605 |
Chain | Residue |
M | ASP427 |
M | ASP429 |
M | 1RY601 |
M | CA604 |
M | HOH786 |
site_id | DC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CAC M 606 |
Chain | Residue |
M | GLU318 |
M | HOH800 |
M | HOH812 |
M | HOH814 |
site_id | DC7 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE ACT M 607 |
site_id | DC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CA N 101 |
Chain | Residue |
M | HOH824 |
N | HOH208 |
Functional Information from PROSITE/UniProt
site_id | PS00522 |
Number of Residues | 20 |
Details | DNA_POLYMERASE_X DNA polymerase family X signature. GSYrRGkatCgDVDVLIthP |
Chain | Residue | Details |
A | GLY416-PRO435 | |
Functional Information from SwissProt/UniProt
Chain | Residue | Details |
A | LYS312 | |
E | LYS312 | |
I | LYS312 | |
M | LYS312 | |
Chain | Residue | Details |
A | ARG386 | |
I | SER417 | |
I | GLY426 | |
I | ASN513 | |
M | ARG386 | |
M | SER417 | |
M | GLY426 | |
M | ASN513 | |
A | SER417 | |
A | GLY426 | |
A | ASN513 | |
E | ARG386 | |
E | SER417 | |
E | GLY426 | |
E | ASN513 | |
I | ARG386 | |
Chain | Residue | Details |
A | ASP427 | |
M | ASP427 | |
M | ASP429 | |
M | ASP490 | |
A | ASP429 | |
A | ASP490 | |
E | ASP427 | |
E | ASP429 | |
E | ASP490 | |
I | ASP427 | |
I | ASP429 | |
I | ASP490 | |