Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4K4H

Ternary crystal structures of a human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND (-)3TC-TP.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003677	molecular_function	DNA binding
A	0003887	molecular_function	DNA-directed DNA polymerase activity
A	0006281	biological_process	DNA repair
A	0016779	molecular_function	nucleotidyltransferase activity
A	0034061	molecular_function	DNA polymerase activity
E	0003677	molecular_function	DNA binding
E	0003887	molecular_function	DNA-directed DNA polymerase activity
E	0006281	biological_process	DNA repair
E	0016779	molecular_function	nucleotidyltransferase activity
E	0034061	molecular_function	DNA polymerase activity
I	0003677	molecular_function	DNA binding
I	0003887	molecular_function	DNA-directed DNA polymerase activity
I	0006281	biological_process	DNA repair
I	0016779	molecular_function	nucleotidyltransferase activity
I	0034061	molecular_function	DNA polymerase activity
M	0003677	molecular_function	DNA binding
M	0003887	molecular_function	DNA-directed DNA polymerase activity
M	0006281	biological_process	DNA repair
M	0016779	molecular_function	nucleotidyltransferase activity
M	0034061	molecular_function	DNA polymerase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	21
Details	BINDING SITE FOR RESIDUE 1RZ A 601

Chain	Residue
A	ARG386
A	PHE506
A	ALA510
A	ASN513
A	CA602
A	CA604
A	HOH704
A	HOH707
A	HOH752
A	HOH755
A	HOH794
A	GLY416
B	DG5
C	DC6
A	SER417
A	ARG420
A	CYS425
A	GLY426
A	ASP427
A	ASP429
A	TYR505

site_id	AC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA A 602

Chain	Residue
A	ASP427
A	ASP429
A	1RZ601
A	HOH707

site_id	AC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA A 603

Chain	Residue
A	SER463
A	HOH774
A	HOH812
A	HOH813
B	DT10
B	HOH206

site_id	AC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA A 604

Chain	Residue
A	ASP427
A	ASP429
A	ASP490
A	1RZ601
A	HOH752
C	DC6

site_id	AC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA A 605

Chain	Residue
A	SER339
A	ILE341
A	ALA344
C	DA5
C	HOH101
C	HOH111

site_id	AC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA A 606

Chain	Residue
A	GLU396
A	GLN400
A	CYS412

site_id	AC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA A 607

Chain	Residue
A	CYS300
A	ILE302
A	ILE305
A	HOH701
A	HOH732
D	DC3
M	LYS307

site_id	AC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ACT A 608

Chain	Residue
A	THR555
A	GLU556

site_id	AC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 101

Chain	Residue
B	HOH202
B	HOH203

site_id	BC1
Number of Residues	18
Details	BINDING SITE FOR RESIDUE 1RZ E 601

Chain	Residue
E	ARG386
E	GLY416
E	SER417
E	ARG420
E	GLY426
E	ASP427
E	ASP429
E	TYR505
E	PHE506
E	ASN513
E	CA602
E	CA604
E	HOH701
E	HOH709
E	HOH713
E	HOH727
F	DG5
G	DC6

site_id	BC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA E 602

Chain	Residue
E	ASP427
E	ASP429
E	1RZ601
E	CA604
E	HOH709

site_id	BC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA E 603

Chain	Residue
E	SER339
E	ILE341
E	ALA344
E	HOH732
G	DA5
G	HOH101

site_id	BC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA E 604

Chain	Residue
E	ASP427
E	ASP429
E	ASP490
E	1RZ601
E	CA602

site_id	BC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA E 605

Chain	Residue
E	GLU396
E	GLN400
E	CYS412

site_id	BC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA F 101

Chain	Residue
F	HOH202
F	HOH204
F	HOH206

site_id	BC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ACT F 102

Chain	Residue
H	DG4
J	DC1
F	DG2
F	DG3

site_id	BC8
Number of Residues	19
Details	BINDING SITE FOR RESIDUE 1RZ I 601

Chain	Residue
I	ARG386
I	GLY416
I	SER417
I	ARG420
I	GLY426
I	ASP427
I	ASP429
I	TYR505
I	ASN513
I	ARG514
I	ARG517
I	CA602
I	CA603
I	CA604
I	HOH769
I	HOH770
I	HOH780
J	DG5
K	DC6

site_id	BC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA I 602

Chain	Residue
I	ASP427
I	ASP429
I	1RZ601
I	CA603
I	HOH735

site_id	CC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA I 603

Chain	Residue
I	ASP427
I	ASP429
I	1RZ601
I	CA602
I	HOH743

site_id	CC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA I 604

Chain	Residue
I	ALA510
I	1RZ601
I	HOH780

site_id	CC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA I 605

Chain	Residue
I	SER339
I	ILE341
I	ALA344
I	HOH710
K	DA5
K	HOH102

site_id	CC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ACT I 606

Chain	Residue
I	THR555
I	GLU556

site_id	CC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA J 101

Chain	Residue
J	DC4
J	DG6

site_id	CC6
Number of Residues	15
Details	BINDING SITE FOR RESIDUE 1RZ M 601

Chain	Residue
M	ARG386
M	SER417
M	ARG420
M	GLY426
M	TYR505
M	SER509
M	ALA510
M	ASN513
M	ARG517
M	CA603
M	HOH746
M	HOH747
M	HOH836
N	DG5
O	DC6

site_id	CC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA M 602

Chain	Residue
M	ASP427
M	ASP429
M	CA603
M	HOH732
M	HOH786
M	HOH841

site_id	CC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA M 603

Chain	Residue
M	ASP427
M	ASP429
M	1RZ601
M	CA602
M	HOH747

site_id	CC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA M 604

Chain	Residue
M	SER339
M	ILE341
M	ALA344
O	DA5
O	HOH103

site_id	DC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA M 605

Chain	Residue
M	CYS300
M	ILE302
M	ILE305
P	DC3

site_id	DC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA M 606

Chain	Residue
M	GLU318
M	HOH759
M	HOH769
M	HOH838
M	HOH839
M	HOH840

site_id	DC3
Number of Residues	1
Details	BINDING SITE FOR RESIDUE ACT M 607

Chain	Residue
M	ASP326

site_id	DC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ACT M 608

Chain	Residue
A	PRO482
M	PHE499
M	PRO554
M	THR555
M	GLU556
M	HOH829

site_id	DC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA N 101

Chain	Residue
N	DC4
N	DG6
N	HOH205

Functional Information from PROSITE/UniProt

site_id	PS00522
Number of Residues	20
Details	DNA_POLYMERASE_X DNA polymerase family X signature. GSYrRGkatCgDVDVLIthP

Chain	Residue	Details
A	GLY416-PRO435

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	ACT_SITE: Schiff-base intermediate with DNA => ECO:0000269\|PubMed:11457865

Chain	Residue	Details
A	LYS312
E	LYS312
I	LYS312
M	LYS312

site_id	SWS_FT_FI2
Number of Residues	16
Details	BINDING: BINDING => ECO:0000269\|PubMed:17475573, ECO:0007744\|PDB:2PFP, ECO:0007744\|PDB:2PFQ

Chain	Residue	Details
A	ARG386
I	SER417
I	GLY426
I	ASN513
M	ARG386
M	SER417
M	GLY426
M	ASN513
A	SER417
A	GLY426
A	ASN513
E	ARG386
E	SER417
E	GLY426
E	ASN513
I	ARG386

site_id	SWS_FT_FI3
Number of Residues	12
Details	BINDING: BINDING => ECO:0000269\|PubMed:17475573, ECO:0007744\|PDB:2PFO, ECO:0007744\|PDB:2PFQ

Chain	Residue	Details
A	ASP427
M	ASP427
M	ASP429
M	ASP490
A	ASP429
A	ASP490
E	ASP427
E	ASP429
E	ASP490
I	ASP427
I	ASP429
I	ASP490

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)