4K3Q
E. coli sliding clamp in complex with AcQLDAF
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006260 | biological_process | DNA replication |
| A | 0006261 | biological_process | DNA-templated DNA replication |
| A | 0006271 | biological_process | DNA strand elongation involved in DNA replication |
| A | 0006974 | biological_process | DNA damage response |
| A | 0008408 | molecular_function | 3'-5' exonuclease activity |
| A | 0009360 | cellular_component | DNA polymerase III complex |
| A | 0030174 | biological_process | regulation of DNA-templated DNA replication initiation |
| A | 0030894 | cellular_component | replisome |
| A | 0032297 | biological_process | negative regulation of DNA-templated DNA replication initiation |
| A | 0042276 | biological_process | error-prone translesion synthesis |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0042803 | molecular_function | protein homodimerization activity |
| A | 0044787 | biological_process | bacterial-type DNA replication |
| A | 1990078 | cellular_component | replication inhibiting complex |
| A | 1990085 | cellular_component | Hda-beta clamp complex |
| B | 0003677 | molecular_function | DNA binding |
| B | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006260 | biological_process | DNA replication |
| B | 0006261 | biological_process | DNA-templated DNA replication |
| B | 0006271 | biological_process | DNA strand elongation involved in DNA replication |
| B | 0006974 | biological_process | DNA damage response |
| B | 0008408 | molecular_function | 3'-5' exonuclease activity |
| B | 0009360 | cellular_component | DNA polymerase III complex |
| B | 0030174 | biological_process | regulation of DNA-templated DNA replication initiation |
| B | 0030894 | cellular_component | replisome |
| B | 0032297 | biological_process | negative regulation of DNA-templated DNA replication initiation |
| B | 0042276 | biological_process | error-prone translesion synthesis |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0042803 | molecular_function | protein homodimerization activity |
| B | 0044787 | biological_process | bacterial-type DNA replication |
| B | 1990078 | cellular_component | replication inhibiting complex |
| B | 1990085 | cellular_component | Hda-beta clamp complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE PEG A 401 |
| Chain | Residue |
| A | ALA86 |
| A | GLU87 |
| A | ALA89 |
| A | ARG100 |
| A | SER101 |
| A | GLY102 |
| A | HOH518 |
| A | HOH673 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE PEG A 402 |
| Chain | Residue |
| A | GLY239 |
| A | PHE241 |
| A | HOH541 |
| A | HOH777 |
| A | SER192 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE PEG A 403 |
| Chain | Residue |
| A | GLU161 |
| A | GLU163 |
| A | ARG168 |
| A | TYR244 |
| A | ARG245 |
| site_id | AC4 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE PEG A 404 |
| Chain | Residue |
| A | LYS250 |
| A | VAL344 |
| A | SER345 |
| A | HOH823 |
| B | GLU163 |
| B | GLU166 |
| B | HOH621 |
| B | HOH623 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA A 405 |
| Chain | Residue |
| A | GLY66 |
| A | ALA67 |
| A | HOH529 |
| B | GLU125 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA A 406 |
| Chain | Residue |
| A | GLY280 |
| A | ALA294 |
| A | ASN295 |
| A | HOH588 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE PGE A 407 |
| Chain | Residue |
| A | HIS9 |
| A | ARG56 |
| A | VAL57 |
| A | ALA58 |
| A | ASP229 |
| A | HOH809 |
| site_id | AC8 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CA A 408 |
| Chain | Residue |
| A | SER181 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE PGE A 409 |
| Chain | Residue |
| A | ASP121 |
| A | TRP122 |
| A | ARG224 |
| A | HOH631 |
| A | HOH645 |
| B | ALA38 |
| site_id | BC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE PEG A 410 |
| Chain | Residue |
| A | GLU6 |
| A | GLU8 |
| A | GLY85 |
| A | GLU87 |
| A | HOH870 |
| site_id | BC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CA B 401 |
| Chain | Residue |
| B | ASP211 |
| site_id | BC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CA B 402 |
| Chain | Residue |
| B | GLY46 |
| B | GLU202 |
| site_id | BC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA B 403 |
| Chain | Residue |
| B | GLU161 |
| B | THR162 |
| B | SER190 |
| B | HIS191 |
| site_id | BC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CA B 404 |
| Chain | Residue |
| B | HOH859 |
| B | HOH902 |
| site_id | BC6 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE PG4 B 405 |
| Chain | Residue |
| A | ALA38 |
| A | HOH617 |
| A | HOH879 |
| B | ASP121 |
| B | TRP122 |
| B | ARG224 |
| B | HOH659 |
| B | HOH718 |
| B | HOH792 |
| site_id | BC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE PGE B 406 |
| Chain | Residue |
| B | TYR284 |
| B | LYS291 |
| B | HOH767 |
| site_id | BC8 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE PEG B 407 |
| Chain | Residue |
| A | LYS74 |
| A | ASP77 |
| B | ALA271 |
| B | ILE272 |
| B | SER274 |
| B | GLU276 |
| B | ARG279 |
| B | HOH666 |
| B | HOH786 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000305|PubMed:18191219 |
| Chain | Residue | Details |
| A | ARG24 | |
| A | GLN149 | |
| A | TYR153 | |
| B | ARG24 | |
| B | GLN149 | |
| B | TYR153 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:18191219 |
| Chain | Residue | Details |
| A | ARG73 | |
| B | ARG73 |
