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4JX6

Structure of the carboxyl transferase domain Y628A from Rhizobium etli pyruvate carboxylase with pyruvate

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
B0003824molecular_functioncatalytic activity
C0003824molecular_functioncatalytic activity
D0003824molecular_functioncatalytic activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PYR A 1101
ChainResidue
AARG548
AGLN552
ALEU619
AARG621
AKCX718
ATHR882
AHOH1223

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 1102
ChainResidue
AHIS747
AHIS749
AHOH1223
AASP549
AKCX718

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1103
ChainResidue
AMET534
AARG535
AGLU537
AASP768

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PYR B 1101
ChainResidue
BARG548
BGLN552
BGLY586
BLEU619
BARG621
BTHR882
BHOH1208

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 1102
ChainResidue
BASP549
BKCX718
BHIS747
BHIS749
BHOH1208

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1103
ChainResidue
BMET534
BARG535
BGLU537
BASP768
BHOH1209
BHOH1210

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL C 1101
ChainResidue
AASP750
AGLY779
AASN780
CASP750
CGLY779
CASN780

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 1102
ChainResidue
CASP549
CKCX718
CHIS747
CHIS749
CHOH1210

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C 1103
ChainResidue
CMET534
CARG535
CGLU537
CASP768
CHOH1212

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 1101
ChainResidue
DASP549
DKCX718
DHIS747
DHIS749

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 1102
ChainResidue
DMET534
DARG535
DGLU537
DASP768
DHOH1207
DHOH1208

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 223
ChainResidueDetails
AASP549hydrogen bond acceptor, hydrogen bond donor, metal ligand, proton acceptor, proton donor
AASP655activator, metal ligand
AKCX718electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
ATHR751metal ligand
AGLY753metal ligand
ALYS886proton acceptor, proton donor, proton relay

site_idMCSA2
Number of Residues6
DetailsM-CSA 223
ChainResidueDetails
BASP549hydrogen bond acceptor, hydrogen bond donor, metal ligand, proton acceptor, proton donor
BASP655activator, metal ligand
BKCX718electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BTHR751metal ligand
BGLY753metal ligand
BLYS886proton acceptor, proton donor, proton relay

site_idMCSA3
Number of Residues6
DetailsM-CSA 223
ChainResidueDetails
CASP549hydrogen bond acceptor, hydrogen bond donor, metal ligand, proton acceptor, proton donor
CASP655activator, metal ligand
CKCX718electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
CTHR751metal ligand
CGLY753metal ligand
CLYS886proton acceptor, proton donor, proton relay

site_idMCSA4
Number of Residues6
DetailsM-CSA 223
ChainResidueDetails
DASP549hydrogen bond acceptor, hydrogen bond donor, metal ligand, proton acceptor, proton donor
DASP655activator, metal ligand
DKCX718electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
DTHR751metal ligand
DGLY753metal ligand
DLYS886proton acceptor, proton donor, proton relay

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PDB entries from 2026-01-14

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