4J4J

Crystal structure of the APOBEC3F Vif binding domain

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003824	molecular_function	catalytic activity
A	0008270	molecular_function	zinc ion binding
A	0016787	molecular_function	hydrolase activity
B	0003824	molecular_function	catalytic activity
B	0008270	molecular_function	zinc ion binding
B	0016787	molecular_function	hydrolase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN A 401

Chain	Residue
A	HIS249
A	CYS280
A	CYS283

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site_id	AC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN B 401

Chain	Residue
B	HIS249
B	GLU251
B	CYS280
B	CYS283

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Functional Information from PROSITE/UniProt

site_id	PS00903
Number of Residues	39
Details	CYT_DCMP_DEAMINASES_1 Cytidine and deoxycytidylate deaminases zinc-binding region signature. HAErcFLswfcddilspntnyevtwytsws..........PCpe......CageV

Chain	Residue	Details
A	HIS249-VAL287

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	ACT_SITE: Proton donor => ECO:0000255|PROSITE-ProRule:PRU01083, ECO:0000269|PubMed:31792451, ECO:0007744|PDB:6NIL

Chain	Residue	Details
A	GLU251
B	GLU251

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site_id	SWS_FT_FI2
Number of Residues	6
Details	BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01083, ECO:0000269|PubMed:27139641, ECO:0000269|PubMed:31792451, ECO:0007744|PDB:6NIL

Chain	Residue	Details
A	HIS249
A	CYS280
A	CYS283
B	HIS249
B	CYS280
B	CYS283

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site_id	SWS_FT_FI3
Number of Residues	12
Details	CROSSLNK: (Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:23318957

Chain	Residue	Details
A	LYS234
B	LYS352
B	LYS355
B	LYS358
A	LYS334
A	LYS352
A	LYS355
A	LYS358
B	LYS234
B	LYS334

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