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4J49

PylD holoenzyme soaked with L-lysine-Ne-D-ornithine

Functional Information from GO Data
ChainGOidnamespacecontents
A0008652biological_processamino acid biosynthetic process
A0016491molecular_functionoxidoreductase activity
B0008652biological_processamino acid biosynthetic process
B0016491molecular_functionoxidoreductase activity
Functional Information from PDB Data
site_idAC1
Number of Residues31
DetailsBINDING SITE FOR RESIDUE NAD A 901
ChainResidue
AASN121
AALA203
ATHR204
APRO205
ACYS206
ATHR209
APRO224
AILE226
AGLU245
APRO246
ALEU247
ATHR125
AMG903
AHOH1001
AHOH1015
AHOH1017
AHOH1021
AHOH1024
AHOH1039
AHOH1048
AHOH1080
AHOH1086
AGLY150
AHOH1087
AHOH1095
ALYS151
AVAL152
ATYR170
AASP171
AALA172
ALEU176

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 902
ChainResidue
AGLU202
ATHR204
ACYS206
APRO227
AHOH1002

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 903
ChainResidue
ATYR129
AGLU245
ALEU247
AILE249
AGLY250
ANAD901

site_idAC4
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NAI B 901
ChainResidue
BASN121
BTHR125
BVAL147
BGLY150
BLYS151
BVAL152
BTYR170
BASP171
BALA172
BLEU176
BTHR204
BPRO205
BCYS206
BTHR209
BPRO224
BILE226
BGLU245
BPRO246
BLEU247
BMG904
BHOH1001
BHOH1015
BHOH1030
BHOH1049
BHOH1050
BHOH1062

site_idAC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE 1J1 B 902
ChainResidue
BLEU4
BPRO52
BVAL53
BILE59
BILE60
BPHE63
BALA103
BHOH1003
BHOH1033
BHOH1082

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 903
ChainResidue
BGLU202
BTHR204
BCYS206
BPRO227
BHOH1005

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 904
ChainResidue
BTYR129
BGLU245
BLEU247
BILE249
BGLY250
BNAI901

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:24916332, ECO:0007744|PDB:4Q39
ChainResidueDetails
ALEU4
AVAL53
AILE60
AALA103
BLEU4
BVAL53
BILE60
BALA103

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:23720358, ECO:0000269|PubMed:24916332, ECO:0007744|PDB:4JK3, ECO:0007744|PDB:4Q3D
ChainResidueDetails
ALYS151
BASP171
BCYS206
BPRO224
BILE226
BGLU245
AVAL152
AASP171
ACYS206
APRO224
AILE226
AGLU245
BLYS151
BVAL152

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PDB entries from 2025-06-18

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