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4IS3

Crystal structure of a 3alpha-hydroxysteroid dehydrogenase (BaiA2) associated with secondary bile acid synthesis from Clostridium scindens VPI12708 in complex with a putative NAD(+)-OH- adduct at 2.0 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006699biological_processbile acid biosynthetic process
A0008202biological_processsteroid metabolic process
A0008206biological_processbile acid metabolic process
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0030573biological_processbile acid catabolic process
A0032052molecular_functionbile acid binding
A0033764molecular_functionsteroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0033792molecular_function3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase activity
A0051289biological_processprotein homotetramerization
A0070403molecular_functionNAD+ binding
A1903412biological_processresponse to bile acid
B0005737cellular_componentcytoplasm
B0006699biological_processbile acid biosynthetic process
B0008202biological_processsteroid metabolic process
B0008206biological_processbile acid metabolic process
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0030573biological_processbile acid catabolic process
B0032052molecular_functionbile acid binding
B0033764molecular_functionsteroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0033792molecular_function3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase activity
B0051289biological_processprotein homotetramerization
B0070403molecular_functionNAD+ binding
B1903412biological_processresponse to bile acid
C0005737cellular_componentcytoplasm
C0006699biological_processbile acid biosynthetic process
C0008202biological_processsteroid metabolic process
C0008206biological_processbile acid metabolic process
C0016491molecular_functionoxidoreductase activity
C0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
C0030573biological_processbile acid catabolic process
C0032052molecular_functionbile acid binding
C0033764molecular_functionsteroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
C0033792molecular_function3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase activity
C0051289biological_processprotein homotetramerization
C0070403molecular_functionNAD+ binding
C1903412biological_processresponse to bile acid
D0005737cellular_componentcytoplasm
D0006699biological_processbile acid biosynthetic process
D0008202biological_processsteroid metabolic process
D0008206biological_processbile acid metabolic process
D0016491molecular_functionoxidoreductase activity
D0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
D0030573biological_processbile acid catabolic process
D0032052molecular_functionbile acid binding
D0033764molecular_functionsteroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
D0033792molecular_function3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase activity
D0051289biological_processprotein homotetramerization
D0070403molecular_functionNAD+ binding
D1903412biological_processresponse to bile acid
Functional Information from PDB Data
site_idAC1
Number of Residues35
DetailsBINDING SITE FOR RESIDUE NAD A 300
ChainResidue
AGLY13
AALA93
AGLY94
AILE95
AILE115
ATHR142
AALA143
ASER144
ATYR157
ALYS161
APRO187
ATHR15
AGLY188
AVAL189
AVAL190
ATHR192
AMSE194
ATHR195
AHOH488
AHOH523
AHOH531
AHOH669
AARG16
AHOH676
AHOH702
AHOH716
AHOH970
AHOH975
AHOH1069
AGLY17
AILE18
AGLU38
AGLU42
ALEU66
AASN92

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 400
ChainResidue
ATHR15
AARG16
AGLU42

site_idAC3
Number of Residues35
DetailsBINDING SITE FOR RESIDUE NAD B 300
ChainResidue
BGLY13
BTHR15
BARG16
BGLY17
BILE18
BGLU38
BGLU42
BLEU66
BASN92
BALA93
BGLY94
BILE95
BILE115
BTHR142
BALA143
BSER144
BTYR157
BLYS161
BPRO187
BGLY188
BVAL189
BVAL190
BTHR192
BMSE194
BTHR195
BHOH464
BHOH540
BHOH681
BHOH738
BHOH739
BHOH764
BHOH771
BHOH912
BHOH990
BHOH993

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT B 401
ChainResidue
BTHR15
BARG16
BGLU42
BHOH959

site_idAC5
Number of Residues35
DetailsBINDING SITE FOR RESIDUE NAD C 300
ChainResidue
CTHR192
CASP193
CMSE194
CTHR195
CHOH504
CHOH506
CHOH562
CHOH682
CHOH833
CHOH916
CHOH1008
CHOH1009
CHOH1023
CGLY13
CTHR15
CARG16
CGLY17
CILE18
CGLU38
CGLU42
CLEU66
CASN92
CALA93
CGLY94
CILE95
CILE115
CTHR142
CALA143
CSER144
CTYR157
CLYS161
CPRO187
CGLY188
CVAL189
CVAL190

site_idAC6
Number of Residues34
DetailsBINDING SITE FOR RESIDUE NAD D 300
ChainResidue
DGLY13
DTHR15
DARG16
DGLY17
DILE18
DGLU38
DGLU42
DLEU66
DASN92
DALA93
DGLY94
DILE95
DILE115
DTHR142
DALA143
DSER144
DTYR157
DLYS161
DPRO187
DGLY188
DVAL189
DVAL190
DTHR192
DMSE194
DTHR195
DHOH530
DHOH838
DHOH839
DHOH841
DHOH848
DHOH961
DHOH1025
DHOH1124
DHOH1125

Functional Information from PROSITE/UniProt
site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. SvtgifgslsGvgYPASKASViGLThGLG
ChainResidueDetails
ASER144-GLY172

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton donor/acceptor => ECO:0000255|PROSITE-ProRule:PRU10001, ECO:0000305|PubMed:23836456
ChainResidueDetails
ATYR157
BTYR157
CTYR157
DTYR157

site_idSWS_FT_FI2
Number of Residues4
DetailsACT_SITE: Proton donor/acceptor => ECO:0000305|PubMed:23836456
ChainResidueDetails
ALYS161
BLYS161
CLYS161
DLYS161

site_idSWS_FT_FI3
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:23836456, ECO:0007744|PDB:4IS3
ChainResidueDetails
ALYS161
AVAL190
BTHR15
BGLU38
BGLU42
BASN92
BLYS161
BVAL190
CTHR15
CGLU38
CGLU42
CASN92
CLYS161
CVAL190
DTHR15
DGLU38
DGLU42
DASN92
DLYS161
DVAL190
ATHR15
AGLU38
AGLU42
AASN92

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ASER144
BSER144
CSER144
DSER144

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PDB entries from 2024-06-12

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