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4IRK

structure of Polymerase-DNA complex, dna

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0000731biological_processDNA synthesis involved in DNA repair
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0008296molecular_function3'-5'-DNA exonuclease activity
A0009432biological_processSOS response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
A0070987biological_processerror-free translesion synthesis
B0000287molecular_functionmagnesium ion binding
B0000731biological_processDNA synthesis involved in DNA repair
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0008296molecular_function3'-5'-DNA exonuclease activity
B0009432biological_processSOS response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
B0070987biological_processerror-free translesion synthesis
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE DCP B 401
ChainResidue
BASP8
BASP103
BGLU104
BLYS157
BMG402
BHOH530
CDA840
GDOC873
BMET9
BASP10
BCYS11
BPHE12
BPHE13
BSER42
BTHR43
BSER55

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 402
ChainResidue
BASP8
BMET9
BASP103
BGLU104
BDCP401

site_idAC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE DCP A 401
ChainResidue
AASP8
AMET9
AASP10
ACYS11
APHE12
APHE13
ASER42
ATHR43
AARG49
AASP103
AGLU104
ALYS157
AMG402
AHOH507
AHOH514
AHOH523
AHOH547
AHOH548
FDA840
FDG841
HDOC873
HHOH905

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 402
ChainResidue
AASP8
AMET9
AASP103
ADCP401

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000250
ChainResidueDetails
BGLU104
AGLU104

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
BASP8
BASP103
AASP8
AASP103

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination => ECO:0000250
ChainResidueDetails
BPHE13
APHE13

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PDB entries from 2024-05-15

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