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4II3

Crystal structure of S. pombe Ubiquitin activating enzyme 1 (Uba1) in complex with ubiquitin and ATP/Mg

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004839molecular_functionubiquitin activating enzyme activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006511biological_processubiquitin-dependent protein catabolic process
A0006974biological_processDNA damage response
A0008641molecular_functionubiquitin-like modifier activating enzyme activity
A0016567biological_processprotein ubiquitination
A0016874molecular_functionligase activity
A0016887molecular_functionATP hydrolysis activity
A0036211biological_processprotein modification process
C0000287molecular_functionmagnesium ion binding
C0004839molecular_functionubiquitin activating enzyme activity
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006511biological_processubiquitin-dependent protein catabolic process
C0006974biological_processDNA damage response
C0008641molecular_functionubiquitin-like modifier activating enzyme activity
C0016567biological_processprotein ubiquitination
C0016874molecular_functionligase activity
C0016887molecular_functionATP hydrolysis activity
C0036211biological_processprotein modification process
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1101
ChainResidue
AASP537
AATP1103
AHOH1226
AHOH1263

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1102
ChainResidue
AASP465
AGLU468
AATP1103

site_idAC3
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ATP A 1103
ChainResidue
AALA437
AASP463
AMET464
AASP465
AARG474
ALYS487
AVAL513
AALA535
AASP537
AASN538
AALA541
AMG1101
AMG1102
AHOH1226
AHOH1246
AHOH1259
AHOH1263
BGLY76
AARG22
AGLY436

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CA A 1104
ChainResidue
AASP918
AHOH1202

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CA A 1105
ChainResidue
AGLU205
AHOH1230

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CA A 1106
ChainResidue
AGLU665

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CA A 1107
ChainResidue
ATYR920
AGLU938

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG C 1101
ChainResidue
CASP537
CATP1103
CHOH1213

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG C 1102
ChainResidue
CASP465
CGLU468
CATP1103

site_idBC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE ATP C 1103
ChainResidue
CARG22
CGLY436
CALA437
CASP463
CMET464
CASP465
CASN471
CARG474
CLYS487
CARG512
CVAL513
CALA535
CASP537
CASN538
CMG1101
CMG1102
CHOH1213
DGLY76

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA C 1104
ChainResidue
ATHR261
CASP996
CGLY1000
CHOH1240

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA C 1105
ChainResidue
CASP918
CHOH1241
CHOH1242

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CA C 1106
ChainResidue
CASP611
CGLN619

site_idBC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CA C 1107
ChainResidue
CGLU938

site_idBC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CA C 1108
ChainResidue
CTYR920

site_idBC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CA C 1109
ChainResidue
CTHR657

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KskIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
BLYS27-ASP52

site_idPS00865
Number of Residues9
DetailsUBIQUITIN_ACTIVAT_2 Ubiquitin-activating enzyme active site. PICTLKnFP
ChainResidueDetails
APRO591-PRO599

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)
ChainResidueDetails
BLYS6
BLYS11
BLYS27
BLYS33
DLYS6
DLYS11
DLYS27
DLYS33

site_idSWS_FT_FI2
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|PROSITE-ProRule:PRU00214
ChainResidueDetails
AARG22
CLYS487
CVAL513
CASP537
BGLY76
AASP463
DGLY76
AVAL513
AASP537
CARG22
CALA437
CASP463

site_idSWS_FT_FI3
Number of Residues6
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250
ChainResidueDetails
BLYS29
BLYS48
BLYS63
DLYS29
DLYS48
DLYS63

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PDB entries from 2024-07-10

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