Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4I50

Crystal structure of tubulin-stathmin-TTL-Epothilone A complex

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0000226	biological_process	microtubule cytoskeleton organization
A	0000278	biological_process	mitotic cell cycle
A	0003725	molecular_function	double-stranded RNA binding
A	0003924	molecular_function	GTPase activity
A	0005200	molecular_function	structural constituent of cytoskeleton
A	0005525	molecular_function	GTP binding
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0005856	cellular_component	cytoskeleton
A	0005874	cellular_component	microtubule
A	0005881	cellular_component	cytoplasmic microtubule
A	0005929	cellular_component	cilium
A	0007017	biological_process	microtubule-based process
A	0015630	cellular_component	microtubule cytoskeleton
A	0016787	molecular_function	hydrolase activity
A	0031625	molecular_function	ubiquitin protein ligase binding
A	0046872	molecular_function	metal ion binding
A	0071353	biological_process	cellular response to interleukin-4
B	0000166	molecular_function	nucleotide binding
B	0000226	biological_process	microtubule cytoskeleton organization
B	0000278	biological_process	mitotic cell cycle
B	0001764	biological_process	neuron migration
B	0003924	molecular_function	GTPase activity
B	0005200	molecular_function	structural constituent of cytoskeleton
B	0005525	molecular_function	GTP binding
B	0005737	cellular_component	cytoplasm
B	0005856	cellular_component	cytoskeleton
B	0005874	cellular_component	microtubule
B	0007017	biological_process	microtubule-based process
B	0007399	biological_process	nervous system development
B	0015630	cellular_component	microtubule cytoskeleton
B	0046872	molecular_function	metal ion binding
B	0046982	molecular_function	protein heterodimerization activity
B	1902669	biological_process	positive regulation of axon guidance
C	0000166	molecular_function	nucleotide binding
C	0000226	biological_process	microtubule cytoskeleton organization
C	0000278	biological_process	mitotic cell cycle
C	0003725	molecular_function	double-stranded RNA binding
C	0003924	molecular_function	GTPase activity
C	0005200	molecular_function	structural constituent of cytoskeleton
C	0005525	molecular_function	GTP binding
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0005856	cellular_component	cytoskeleton
C	0005874	cellular_component	microtubule
C	0005881	cellular_component	cytoplasmic microtubule
C	0005929	cellular_component	cilium
C	0007017	biological_process	microtubule-based process
C	0015630	cellular_component	microtubule cytoskeleton
C	0016787	molecular_function	hydrolase activity
C	0031625	molecular_function	ubiquitin protein ligase binding
C	0046872	molecular_function	metal ion binding
C	0071353	biological_process	cellular response to interleukin-4
D	0000166	molecular_function	nucleotide binding
D	0000226	biological_process	microtubule cytoskeleton organization
D	0000278	biological_process	mitotic cell cycle
D	0001764	biological_process	neuron migration
D	0003924	molecular_function	GTPase activity
D	0005200	molecular_function	structural constituent of cytoskeleton
D	0005525	molecular_function	GTP binding
D	0005737	cellular_component	cytoplasm
D	0005856	cellular_component	cytoskeleton
D	0005874	cellular_component	microtubule
D	0007017	biological_process	microtubule-based process
D	0007399	biological_process	nervous system development
D	0015630	cellular_component	microtubule cytoskeleton
D	0046872	molecular_function	metal ion binding
D	0046982	molecular_function	protein heterodimerization activity
D	1902669	biological_process	positive regulation of axon guidance
E	0031110	biological_process	regulation of microtubule polymerization or depolymerization
F	0036211	biological_process	protein modification process

Functional Information from PDB Data

site_id	AC1
Number of Residues	27
Details	BINDING SITE FOR RESIDUE GTP A 501

Chain	Residue
A	GLY10
A	GLY143
A	GLY144
A	THR145
A	GLY146
A	VAL177
A	GLU183
A	ASN206
A	TYR224
A	ASN228
A	ILE231
A	GLN11
A	MG502
A	HOH601
A	HOH606
A	HOH609
A	HOH610
A	HOH611
A	HOH612
B	LYS254
A	ALA12
A	GLN15
A	ASP98
A	ALA99
A	ALA100
A	ASN101
A	SER140

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG A 502

Chain	Residue
A	GLN11
A	GTP501
A	HOH609
A	HOH612
B	LYS254

site_id	AC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA A 503

Chain	Residue
A	ASP39
A	THR41
A	GLY44
A	GLU55
A	HOH650

site_id	AC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL A 504

Chain	Residue
A	TYR161
A	LYS163
A	LYS164

site_id	AC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA A 505

Chain	Residue
A	HOH620
A	HOH656

site_id	AC6
Number of Residues	9
Details	BINDING SITE FOR RESIDUE GOL A 506

Chain	Residue
A	ARG105
A	THR109
A	GLY410
A	GLU411
A	GOL507
A	HOH637
B	ASP163
B	ARG253
B	MES504

site_id	AC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 507

Chain	Residue
A	HIS406
A	GLY410
A	GOL506
B	MES504

site_id	AC8
Number of Residues	22
Details	BINDING SITE FOR RESIDUE GDP B 501

Chain	Residue
B	GLY10
B	GLN11
B	CYS12
B	GLN15
B	SER140
B	GLY143
B	GLY144
B	THR145
B	GLY146
B	VAL177
B	ASP179
B	GLU183
B	ASN206
B	TYR224
B	ASN228
B	MG502
B	HOH601
B	HOH602
B	HOH608
B	HOH617
B	HOH627
B	HOH629

site_id	AC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG B 502

Chain	Residue
B	GLN11
B	GDP501
B	HOH609
B	HOH610
B	HOH614
C	HOH717

site_id	BC1
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA B 503

Chain	Residue
B	GLU113

site_id	BC2
Number of Residues	9
Details	BINDING SITE FOR RESIDUE MES B 504

Chain	Residue
A	GOL506
A	GOL507
B	ARG158
B	PRO162
B	ASP163
B	ARG164
B	ASN197
B	ASP199
B	ARG253

site_id	BC3
Number of Residues	27
Details	BINDING SITE FOR RESIDUE GTP C 501

Chain	Residue
C	ALA100
C	ASN101
C	SER140
C	GLY143
C	GLY144
C	THR145
C	GLY146
C	VAL177
C	GLU183
C	ASN206
C	TYR224
C	ASN228
C	ILE231
C	MG502
C	HOH613
C	HOH614
C	HOH620
C	HOH622
C	HOH647
C	HOH684
D	LYS254
C	GLY10
C	GLN11
C	ALA12
C	GLN15
C	ASP98
C	ALA99

site_id	BC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 502

Chain	Residue
C	GLU71
C	GTP501
C	HOH613
C	HOH620
C	HOH622
C	HOH646

site_id	BC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA C 503

Chain	Residue
C	ASP39
C	THR41
C	GLY44
C	GLU55

site_id	BC6
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA C 504

Chain	Residue
C	GLU196

site_id	BC7
Number of Residues	20
Details	BINDING SITE FOR RESIDUE GDP D 501

Chain	Residue
D	GLY10
D	GLN11
D	CYS12
D	GLN15
D	SER140
D	GLY143
D	GLY144
D	THR145
D	GLY146
D	VAL177
D	ASP179
D	GLU183
D	ASN206
D	TYR224
D	ASN228
D	MG502
D	HOH608
D	HOH613
D	HOH617
D	HOH623

site_id	BC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG D 502

Chain	Residue
D	GLN11
D	ASP179
D	GDP501
D	HOH616

site_id	BC9
Number of Residues	9
Details	BINDING SITE FOR RESIDUE MES D 503

Chain	Residue
C	GLY410
C	GLU411
D	ARG158
D	PRO162
D	ASP163
D	ARG164
D	ASP199
D	ARG253
E	ARG112

site_id	CC1
Number of Residues	10
Details	BINDING SITE FOR RESIDUE EP D 504

Chain	Residue
D	LEU217
D	ASP226
D	HIS229
D	PHE272
D	PRO274
D	LEU275
D	THR276
D	ARG278
D	GLN281
D	ARG284

site_id	CC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL D 505

Chain	Residue
D	LYS176
D	VAL177
D	PRO222
D	THR223
D	TYR224

site_id	CC3
Number of Residues	16
Details	BINDING SITE FOR RESIDUE ACP F 401

Chain	Residue
F	LYS74
F	ILE148
F	GLN183
F	LYS184
F	TYR185
F	LEU186
F	LYS198
F	ASP200
F	ARG202
F	THR241
F	ASN242
F	ASP318
F	GLU331
F	ASN333
F	MG402
F	MG403

site_id	CC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG F 402

Chain	Residue
F	ASP200
F	ARG222
F	ASP318
F	ACP401

site_id	CC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG F 403

Chain	Residue
F	LYS74
F	GLU331
F	ASN333
F	ACP401

Functional Information from PROSITE/UniProt

site_id	PS00227
Number of Residues	7
Details	TUBULIN Tubulin subunits alpha, beta, and gamma signature. GGGTGSG

Chain	Residue	Details
A	GLY142-GLY148
B	GLY142-GLY148

site_id	PS00228
Number of Residues	4
Details	TUBULIN_B_AUTOREG Tubulin-beta mRNA autoregulation signal. MREI

Chain	Residue	Details
B	MET1-ILE4

site_id	PS00563
Number of Residues	10
Details	STATHMIN_1 Stathmin family signature 1. PRRRDpSLEE

Chain	Residue	Details
E	PRO40-GLU49

site_id	PS01041
Number of Residues	10
Details	STATHMIN_2 Stathmin family signature 2. AEKREHEREV

Chain	Residue	Details
E	ALA73-VAL82

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	Active site: {"evidences":[{"source":"UniProtKB","id":"P68363","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	18
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"P68363","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	2
Details	Modified residue: {"description":"N6-acetyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P68363","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P68363","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	2
Details	Modified residue: {"description":"Omega-N-methylarginine","evidences":[{"source":"UniProtKB","id":"P68363","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	6
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"UniProtKB","id":"P68363","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	1
Details	Modified residue: {"description":"3'-nitrotyrosine","evidences":[{"source":"UniProtKB","id":"P68373","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P68373","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	14
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"Q13509","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI10
Number of Residues	2
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P99024","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	2
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"Q3KRE8","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI12
Number of Residues	2
Details	Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P99024","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI13
Number of Residues	2
Details	Modified residue: {"description":"Phosphoserine; by CDK1","evidences":[{"source":"UniProtKB","id":"Q9BVA1","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI14
Number of Residues	4
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"P07437","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI15
Number of Residues	2
Details	Modified residue: {"description":"Omega-N-methylarginine","evidences":[{"source":"UniProtKB","id":"P07437","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI16
Number of Residues	2
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"UniProtKB","id":"P07437","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI17
Number of Residues	4
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"UniProtKB","id":"P07437","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI18
Number of Residues	2
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"22673903","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)