4HX9
Designed Phosphodeoxyribosyltransferase
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0009117 | biological_process | nucleotide metabolic process |
A | 0016740 | molecular_function | transferase activity |
A | 0043173 | biological_process | nucleotide salvage |
A | 0050144 | molecular_function | nucleoside deoxyribosyltransferase activity |
B | 0009117 | biological_process | nucleotide metabolic process |
B | 0016740 | molecular_function | transferase activity |
B | 0043173 | biological_process | nucleotide salvage |
B | 0050144 | molecular_function | nucleoside deoxyribosyltransferase activity |
C | 0009117 | biological_process | nucleotide metabolic process |
C | 0016740 | molecular_function | transferase activity |
C | 0043173 | biological_process | nucleotide salvage |
C | 0050144 | molecular_function | nucleoside deoxyribosyltransferase activity |
D | 0009117 | biological_process | nucleotide metabolic process |
D | 0016740 | molecular_function | transferase activity |
D | 0043173 | biological_process | nucleotide salvage |
D | 0050144 | molecular_function | nucleoside deoxyribosyltransferase activity |
E | 0009117 | biological_process | nucleotide metabolic process |
E | 0016740 | molecular_function | transferase activity |
E | 0043173 | biological_process | nucleotide salvage |
E | 0050144 | molecular_function | nucleoside deoxyribosyltransferase activity |
F | 0009117 | biological_process | nucleotide metabolic process |
F | 0016740 | molecular_function | transferase activity |
F | 0043173 | biological_process | nucleotide salvage |
F | 0050144 | molecular_function | nucleoside deoxyribosyltransferase activity |
G | 0009117 | biological_process | nucleotide metabolic process |
G | 0016740 | molecular_function | transferase activity |
G | 0043173 | biological_process | nucleotide salvage |
G | 0050144 | molecular_function | nucleoside deoxyribosyltransferase activity |
H | 0009117 | biological_process | nucleotide metabolic process |
H | 0016740 | molecular_function | transferase activity |
H | 0043173 | biological_process | nucleotide salvage |
H | 0050144 | molecular_function | nucleoside deoxyribosyltransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 201 |
Chain | Residue |
A | ILE34 |
A | ASP35 |
A | LEU36 |
A | GLU37 |
site_id | AC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 A 202 |
Chain | Residue |
B | GLY94 |
B | LEU95 |
B | GLY96 |
A | GLY92 |
A | THR93 |
A | GLY94 |
A | GLY96 |
B | THR93 |
site_id | AC3 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE PG4 A 203 |
Chain | Residue |
A | THR66 |
A | ASN70 |
A | TRP127 |
A | GLY128 |
A | SER130 |
A | PHE149 |
B | ASN70 |
B | TRP127 |
B | PHE149 |
B | PHE151 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B 201 |
Chain | Residue |
B | ILE34 |
B | LEU36 |
B | GLU37 |
B | HOH302 |
B | HOH331 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PG4 B 202 |
Chain | Residue |
B | TYR118 |
B | GLU153 |
B | HOH340 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 E 201 |
Chain | Residue |
E | ILE34 |
E | LEU36 |
E | GLU37 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 E 202 |
Chain | Residue |
E | GLN91 |
E | GLY92 |
E | GLY94 |
E | LEU95 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 F 201 |
Chain | Residue |
A | LYS22 |
A | GLU26 |
F | ILE34 |
F | ASP35 |
F | LEU36 |
F | GLU37 |
F | HOH301 |
site_id | AC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 F 202 |
Chain | Residue |
E | TYR157 |
F | GLN17 |
F | GLN91 |
F | GLY92 |
F | THR93 |
F | GLY94 |
F | LEU95 |
site_id | BC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PG4 F 203 |
Chain | Residue |
A | TYR58 |
A | ASP61 |
F | TYR118 |
F | GLY119 |
F | LYS120 |
F | GLU153 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PG4 F 204 |
Chain | Residue |
C | TRP127 |
C | PHE149 |
D | ASN70 |
E | ASN70 |
F | TRP127 |
F | PHE149 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 C 201 |
Chain | Residue |
C | LYS29 |
C | ILE34 |
C | LEU36 |
C | GLU37 |
site_id | BC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 201 |
Chain | Residue |
D | ILE34 |
D | ASP35 |
D | LEU36 |
D | GLU37 |
D | HOH309 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 D 202 |
Chain | Residue |
D | GLN17 |
D | GLY92 |
D | THR93 |
D | GLY94 |
D | LEU95 |
D | HOH324 |
site_id | BC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PG4 D 203 |
Chain | Residue |
C | ASP61 |
D | ASP115 |
D | GLU116 |
D | TYR118 |
site_id | BC7 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE PG4 D 204 |
Chain | Residue |
C | ASN70 |
D | TRP127 |
D | GLY128 |
D | SER130 |
D | PHE149 |
D | PHE151 |
G | TRP127 |
G | GLY128 |
G | PHE149 |
H | THR66 |
H | ASN70 |
site_id | BC8 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 G 201 |
Chain | Residue |
G | LEU95 |
G | HOH306 |
H | TYR157 |
G | ARG13 |
G | GLN17 |
G | GLN91 |
G | GLY92 |
G | THR93 |
G | GLY94 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 G 202 |
Chain | Residue |
G | ILE34 |
G | ASP35 |
G | LEU36 |
G | GLU37 |
site_id | CC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 H 201 |
Chain | Residue |
H | ILE34 |
H | ASP35 |
H | LEU36 |
H | GLU37 |
site_id | CC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 H 202 |
Chain | Residue |
G | TYR157 |
H | ARG13 |
H | GLN91 |
H | GLY92 |
H | GLY94 |
H | LEU95 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | ACT_SITE: Nucleophile => ECO:0000269|PubMed:7797550 |
Chain | Residue | Details |
A | GLU98 | |
B | GLU98 | |
E | GLU98 | |
F | GLU98 | |
C | GLU98 | |
D | GLU98 | |
G | GLU98 | |
H | GLU98 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 4 |
Details | M-CSA 554 |
Chain | Residue | Details |
A | TYR7 | electrostatic stabiliser |
A | ASP72 | electrostatic stabiliser |
A | GLY92 | proton donor, proton shuttle (general acid/base) |
A | GLU98 | covalently attached, electrostatic stabiliser |
site_id | MCSA2 |
Number of Residues | 4 |
Details | M-CSA 554 |
Chain | Residue | Details |
B | TYR7 | electrostatic stabiliser |
B | ASP72 | electrostatic stabiliser |
B | GLY92 | proton donor, proton shuttle (general acid/base) |
B | GLU98 | covalently attached, electrostatic stabiliser |
site_id | MCSA3 |
Number of Residues | 4 |
Details | M-CSA 554 |
Chain | Residue | Details |
E | TYR7 | electrostatic stabiliser |
E | ASP72 | electrostatic stabiliser |
E | GLY92 | proton donor, proton shuttle (general acid/base) |
E | GLU98 | covalently attached, electrostatic stabiliser |
site_id | MCSA4 |
Number of Residues | 4 |
Details | M-CSA 554 |
Chain | Residue | Details |
F | TYR7 | electrostatic stabiliser |
F | ASP72 | electrostatic stabiliser |
F | GLY92 | proton donor, proton shuttle (general acid/base) |
F | GLU98 | covalently attached, electrostatic stabiliser |
site_id | MCSA5 |
Number of Residues | 4 |
Details | M-CSA 554 |
Chain | Residue | Details |
C | TYR7 | electrostatic stabiliser |
C | ASP72 | electrostatic stabiliser |
C | GLY92 | proton donor, proton shuttle (general acid/base) |
C | GLU98 | covalently attached, electrostatic stabiliser |
site_id | MCSA6 |
Number of Residues | 4 |
Details | M-CSA 554 |
Chain | Residue | Details |
D | TYR7 | electrostatic stabiliser |
D | ASP72 | electrostatic stabiliser |
D | GLY92 | proton donor, proton shuttle (general acid/base) |
D | GLU98 | covalently attached, electrostatic stabiliser |
site_id | MCSA7 |
Number of Residues | 4 |
Details | M-CSA 554 |
Chain | Residue | Details |
G | TYR7 | electrostatic stabiliser |
G | ASP72 | electrostatic stabiliser |
G | GLY92 | proton donor, proton shuttle (general acid/base) |
G | GLU98 | covalently attached, electrostatic stabiliser |
site_id | MCSA8 |
Number of Residues | 4 |
Details | M-CSA 554 |
Chain | Residue | Details |
H | TYR7 | electrostatic stabiliser |
H | ASP72 | electrostatic stabiliser |
H | GLY92 | proton donor, proton shuttle (general acid/base) |
H | GLU98 | covalently attached, electrostatic stabiliser |