4H5M

Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003723	molecular_function	RNA binding
A	0019013	cellular_component	viral nucleocapsid
A	0019028	cellular_component	viral capsid
A	0030430	cellular_component	host cell cytoplasm
A	0042025	cellular_component	host cell nucleus
A	0042802	molecular_function	identical protein binding
A	0044172	cellular_component	host cell endoplasmic reticulum-Golgi intermediate compartment
A	0044177	cellular_component	host cell Golgi apparatus
A	1990904	cellular_component	ribonucleoprotein complex
B	0003723	molecular_function	RNA binding
B	0019013	cellular_component	viral nucleocapsid
B	0019028	cellular_component	viral capsid
B	0030430	cellular_component	host cell cytoplasm
B	0042025	cellular_component	host cell nucleus
B	0042802	molecular_function	identical protein binding
B	0044172	cellular_component	host cell endoplasmic reticulum-Golgi intermediate compartment
B	0044177	cellular_component	host cell Golgi apparatus
B	1990904	cellular_component	ribonucleoprotein complex
C	0003723	molecular_function	RNA binding
C	0019013	cellular_component	viral nucleocapsid
C	0019028	cellular_component	viral capsid
C	0030430	cellular_component	host cell cytoplasm
C	0042025	cellular_component	host cell nucleus
C	0042802	molecular_function	identical protein binding
C	0044172	cellular_component	host cell endoplasmic reticulum-Golgi intermediate compartment
C	0044177	cellular_component	host cell Golgi apparatus
C	1990904	cellular_component	ribonucleoprotein complex
D	0003723	molecular_function	RNA binding
D	0019013	cellular_component	viral nucleocapsid
D	0019028	cellular_component	viral capsid
D	0030430	cellular_component	host cell cytoplasm
D	0042025	cellular_component	host cell nucleus
D	0042802	molecular_function	identical protein binding
D	0044172	cellular_component	host cell endoplasmic reticulum-Golgi intermediate compartment
D	0044177	cellular_component	host cell Golgi apparatus
D	1990904	cellular_component	ribonucleoprotein complex
E	0003723	molecular_function	RNA binding
E	0019013	cellular_component	viral nucleocapsid
E	0019028	cellular_component	viral capsid
E	0030430	cellular_component	host cell cytoplasm
E	0042025	cellular_component	host cell nucleus
E	0042802	molecular_function	identical protein binding
E	0044172	cellular_component	host cell endoplasmic reticulum-Golgi intermediate compartment
E	0044177	cellular_component	host cell Golgi apparatus
E	1990904	cellular_component	ribonucleoprotein complex
F	0003723	molecular_function	RNA binding
F	0019013	cellular_component	viral nucleocapsid
F	0019028	cellular_component	viral capsid
F	0030430	cellular_component	host cell cytoplasm
F	0042025	cellular_component	host cell nucleus
F	0042802	molecular_function	identical protein binding
F	0044172	cellular_component	host cell endoplasmic reticulum-Golgi intermediate compartment
F	0044177	cellular_component	host cell Golgi apparatus
F	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 A 301

Chain	Residue
A	TYR140
A	PRO141
A	ARG142
A	HIS143
A	PHE221

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	42
Details	SITE: RNA-binding => ECO:0000269|PubMed:23129612

Chain	Residue	Details
A	TYR30
B	ASN66
B	LYS67
B	ARG70
B	ARG99
B	ARG106
C	TYR30
C	PHE33
C	ASN66
C	LYS67
C	ARG70
A	PHE33
C	ARG99
C	ARG106
D	TYR30
D	PHE33
D	ASN66
D	LYS67
D	ARG70
D	ARG99
D	ARG106
E	TYR30
A	ASN66
E	PHE33
E	ASN66
E	LYS67
E	ARG70
E	ARG99
E	ARG106
F	TYR30
F	PHE33
F	ASN66
F	LYS67
A	LYS67
F	ARG70
F	ARG99
F	ARG106
A	ARG70
A	ARG99
A	ARG106
B	TYR30
B	PHE33

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site_id	SWS_FT_FI2
Number of Residues	6
Details	SITE: Important for dimerization => ECO:0000269|PubMed:20547879

Chain	Residue	Details
A	TRP125
B	TRP125
C	TRP125
D	TRP125
E	TRP125
F	TRP125

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