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4H2Y

Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and ATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0006418biological_processtRNA aminoacylation for protein translation
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0004812molecular_functionaminoacyl-tRNA ligase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0006418biological_processtRNA aminoacylation for protein translation
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
C0005515molecular_functionprotein binding
D0005515molecular_functionprotein binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 401
ChainResidue
ACYS131
AGLU176
ACYS279
AHOH626
DPNS101

site_idAC2
Number of Residues19
DetailsBINDING SITE FOR RESIDUE ATP A 402
ChainResidue
AMET174
AASP215
APRO216
ALYS235
AALA250
ACYS251
ASER253
AGLY283
AARG286
AMG403
AHOH509
AHOH563
AHOH629
AHOH648
AHOH650
AARG159
AARG168
ALEU169
APHE172

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 403
ChainResidue
AGLU237
AALA250
AATP402

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 401
ChainResidue
BCYS131
BGLU176
BCYS279
BHOH676
CPNS101

site_idAC5
Number of Residues18
DetailsBINDING SITE FOR RESIDUE ATP B 402
ChainResidue
BARG159
BGLU161
BARG168
BLEU169
BPHE172
BMET174
BPRO216
BLYS235
BGLU237
BALA250
BCYS251
BSER253
BGLY283
BARG286
BHOH505
BHOH579
BHOH622
BHOH677

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PNS C 101
ChainResidue
BTYR132
BASP215
BPHE217
BASN228
BGLN232
BLEU234
BHIS257
BHIS260
BZN401
CSER35

site_idAC7
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PNS D 101
ChainResidue
ATYR132
AASP215
AASN228
AGLN232
AASN255
AHIS257
AZN401
AHOH590
AHOH626
AHOH648
DSER35
DPHE36

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
ChainResidueDetails
CSER35
BCYS131
BARG159
BGLU161
BARG168
BGLU176
BLYS235
BALA250
BCYS279
BARG286
DSER35
AGLU161
AARG168
AGLU176
ALYS235
AALA250
ACYS279
AARG286

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PDB entries from 2024-04-10

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