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4H2X

Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and an analogue of glycyl adenylate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0006418biological_processtRNA aminoacylation for protein translation
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0004812molecular_functionaminoacyl-tRNA ligase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0006418biological_processtRNA aminoacylation for protein translation
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
C0005515molecular_functionprotein binding
D0005515molecular_functionprotein binding
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE G5A A 401
ChainResidue
AALA129
ACYS251
ASER253
AASN255
ACSO279
AALA281
AGLY283
AARG286
ACL402
AHOH638
DPNS101
ACSO131
AARG159
ALEU169
APHE172
AMET174
AGLU176
ALYS235
AALA250

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 402
ChainResidue
AGLY283
AMET284
AASP285
AARG286
AG5A401

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 401
ChainResidue
BCYS131
BGLU176
BCYS279
BG5A402

site_idAC4
Number of Residues22
DetailsBINDING SITE FOR RESIDUE G5A B 402
ChainResidue
BALA129
BCYS131
BARG159
BGLU161
BLEU169
BPHE172
BMET174
BGLU176
BLYS235
BALA250
BCYS251
BMET252
BSER253
BASN255
BALA281
BGLY283
BARG286
BZN401
BCL403
BHOH575
BHOH626
CPNS101

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 403
ChainResidue
BGLY283
BMET284
BASP285
BARG286
BG5A402

site_idAC6
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PNS C 101
ChainResidue
BTYR132
BASP215
BASN228
BGLN232
BLEU234
BHIS257
BHIS260
BG5A402
BHOH613
BHOH677
BHOH682
CSER35

site_idAC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PNS D 101
ChainResidue
ACSO131
ATYR132
AASP215
AASN228
AGLN232
AHIS257
AHIS260
AG5A401
AHOH592
DSER35
DPHE36

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
ChainResidueDetails
CSER35
DSER35
BGLU161
BARG168
BGLU176
BLYS235
BALA250
BCYS279
BARG286

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PDB entries from 2024-03-27

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