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4GWG

Crystal Structure Analysis of 6-phosphogluconate dehydrogenase apo-form

Functional Information from GO Data
ChainGOidnamespacecontents
A0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006098biological_processpentose-phosphate shunt
A0009051biological_processpentose-phosphate shunt, oxidative branch
A0016491molecular_functionoxidoreductase activity
A0019322biological_processpentose biosynthetic process
A0019521biological_processD-gluconate metabolic process
A0046177biological_processD-gluconate catabolic process
A0050661molecular_functionNADP binding
A0070062cellular_componentextracellular exosome
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MES A 501
ChainResidue
AGLU104
ATYR105
AARG106
AMET184
ATRP265
AHOH617
AHOH646
AHOH813
AHOH1033

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MES A 502
ChainResidue
AGLY130
AGLU131
AGLY166
AGLY450
AALA451
AHOH1079

Functional Information from PROSITE/UniProt
site_idPS00461
Number of Residues13
Details6PGD 6-phosphogluconate dehydrogenase signature. IrDsaGQKGTGkW
ChainResidueDetails
AILE253-TRP265

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000250
ChainResidueDetails
ALYS183

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000250
ChainResidueDetails
AGLU190

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: in other chain => ECO:0000269|Ref.9
ChainResidueDetails
AGLY9
AASN32
AVAL74

site_idSWS_FT_FI4
Number of Residues6
DetailsBINDING: in other chain => ECO:0000250
ChainResidueDetails
AASN102
ASER128
AHIS186
ATYR191
ALYS260
AARG287

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AARG446
AHIS452

site_idSWS_FT_FI6
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|Ref.9
ChainResidueDetails
ASER477

site_idSWS_FT_FI7
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q9DCD0
ChainResidueDetails
ALYS37

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q9DCD0
ChainResidueDetails
ASER56
ASER128

site_idSWS_FT_FI9
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS58
ALYS308

226707

PDB entries from 2024-10-30

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